Gene
RNA
| Item | Value |
|---|---|
| gene id | G106548 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 28598686 ~ 28599558 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: protocadherin beta-14-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU125994 | True | 873 | lncRNA | 0.41 | 1 | 28598686 | 28599558 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gins2 | gins2,psf2 | coding | upstream | 130936 | 28461829 ~ 28467750 (+) |
| emc8 | emc8,LOC106587369 | coding | upstream | 138509 | 28453060 ~ 28460177 (+) |
| mthfsd | mthfsd | coding | upstream | 375182 | 28215787 ~ 28223504 (+) |
| gas8 | gas8,LOC108276428 | coding | upstream | 383604 | 28206753 ~ 28215082 (+) |
| LOC113526563 | LOC108264624 | coding | upstream | 417483 | 28163685 ~ 28181203 (+) |
| cibar2 | fam92b,LOC108442585 | coding | downstream | 142477 | 28742035 ~ 28750741 (+) |
| si:ch73-103b9.2 | c4h16orf46 | coding | downstream | 174763 | 28774321 ~ 28778017 (+) |
| LOC117597519 | NA | coding | downstream | 920889 | 29520447 ~ 29550296 (+) |
| iqcg | NA | coding | downstream | 1117035 | 29716593 ~ 29724067 (+) |
| ddb1 | ddb1 | coding | downstream | 1507135 | 30106693 ~ 30126222 (+) |
| G106547 | NA | non-coding | upstream | 1132 | 28596367 ~ 28597554 (+) |
| G106522 | NA | non-coding | upstream | 13886 | 28578359 ~ 28584800 (+) |
| G106529 | NA | non-coding | upstream | 21417 | 28575989 ~ 28577269 (+) |
| G106527 | NA | non-coding | upstream | 25220 | 28572679 ~ 28573466 (+) |
| G106531 | NA | non-coding | upstream | 26926 | 28569470 ~ 28571760 (+) |
| G106550 | NA | non-coding | downstream | 12567 | 28612125 ~ 28612764 (+) |
| G106551 | NA | non-coding | downstream | 16659 | 28616217 ~ 28616523 (+) |
| G106555 | NA | non-coding | downstream | 23569 | 28623127 ~ 28628593 (+) |
| G106561 | NA | non-coding | downstream | 34600 | 28634158 ~ 28634366 (+) |
| G106571 | NA | non-coding | downstream | 48405 | 28647963 ~ 28648183 (+) |
| def8 | def8 | other | upstream | 436817 | 28146263 ~ 28161869 (+) |
| uraha | LOC108264586,LOC108417536 | other | upstream | 528001 | 28066882 ~ 28070685 (+) |
| LOC113526832 | LOC108263905,LOC108435606,LOC105906450 | other | upstream | 632378 | 27944790 ~ 27966308 (+) |
| ddx11 | ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 | other | upstream | 1053160 | 27526123 ~ 27545526 (+) |
| G105898 | LOC108264731 | other | upstream | 1384116 | 27211389 ~ 27214570 (+) |
| cmc2 | cmc2,LOC107711752 | other | downstream | 199906 | 28799464 ~ 28804072 (+) |
| dnaja2b | dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 | other | downstream | 1794702 | 30394260 ~ 30498315 (+) |
