G106552


Basic Information

Item Value
gene id G106552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28698428 ~ 28705352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125998
tGAGAAACTAAAACTCAAGAAGTGATGGTACAGTGCTTAAGGCTTTGGACTACTGACtggaaggtcgtgagttcaagTCTCAATAAAAGCATCAGGCAAAGGagcaaatgaaaatgtgtctGGAAACACTGTGGGGTTGTTAATGAACTGTTCACAAGGACAAGTGAAATCTTTGGTGCTCCAAAgaatttcagtttaaaaaatccACCAGAATTGCCAGACTGTCGGTTTGCATGACGTCACCACGCAAAATCTTAAAGTACAGAACATGAAAGTATTTTAATACAGATAAAATACTGTATGATTTTCAGCATGATTTTGCTCTTGCTGATAAAAATTGCACATTTTGGTCTTGGGTTGGGATCGGCGCctgatttagtgccactgcAACCAAACACAGACGacaacaaagttctggcagtgtgtgtttttttaattaaaaaaaatctaatatatcAACGTTTGAGCTTCGTCTAAAATACACCAATAGCAGGACAAAGTACAGAGGAACTGGACTTACGTAAAAGTATAGGTATCAAAAATCTTACTCAGTTAAAATTAGAAGTACGGAGCCAAAAATCTAGCCGAGTGTAAAGTGCATTTGTTTTCTTGTAAATTTACTTGAGTAAGTGTGCAATTATTCGATTTCAATAATACTTTCGTAAAGTAATGCAGAACAGTTGCTCAAGTATTTTCAACCCTTGCTCGCTGCACAGCTACAAACATGTTTAAACGAAACATGGAGTTTAAAGGAACAGTGGATTGTTCAATTGTGGCAACAGAGAGTTCTGTGGTGACGAGACAAAAAGGAACTCGGCACGTAAAGAAATAGCAGATGGATTACAGCTTCCTGTATCTGTACTACATAACACTTCATGTTGTCCTCTTTTCTCCATCCATGAACGCATCCAAACCAGTGTTATTTTTGTAGTCTTAACATTGCCACAAGGAATTCCTAGGAACTAGGACTACTTAACTTTTAAGAGTTCCAGTACTGTCCTGTCTGGACTGGAACTTCCCATCCTTTTTCAAAGCCTCAATAGAAAGAGTTCTTGATGTCAGCTGATACGGGGAATGTAGGAATCTGAGTCAGTGTCAGGAGGAAATACAGCGCATCTAACCATGTGCTCTTCAGTTATCAGACACCACTGTGCTTGACGCAGATAAGAGCCGTGGAGTGGAGTCAGATCTAACAGAGACAGGCGAAGGTGGAGAAGGTCAGGTTGAGGTATCCTGGCCGACAGGAAAGGGTGGGAAAAAGAGCCACTTTTCTTTTCTAAGggaaagcacaaagaaaaatatacagagattttttttctgctacttGTCCAGTCCTTCCATTAGCTCCTGTTGCCTGAGGTTTTGAATTCTCGCATAACAGGAGCCCAGAGTGAGGGCTCACCCTGGCCTAAATACCGTCTACAGCAAACCTCTCTCATTTCTAGTATCCTTTGGATATGGTCTTCAATAAGCTGAGGAGAGAGTTagagaggagacagaaagaaagcaaaagatGTTCTCGGCCCACTGCCAGCTCGAGAAATCAGCACGGTGTCCTCAGAGGGTTTAAATGCTGAACTGCCAAGTCTCAGAGCCCCAGTTTGGGAGTGCAGGGTCTGAGCCAAGAGTGCAAGCCTCGTCTAGGTGCTCCAATCCTCCCCAAAACCCCCTTGAGCCGCTCCCAGGTCAGGACACAATGGCGGGGTGGCACAGAGCAGGGTTCACACGGGACCATCTCATTTATGCAATTCAGCTTGAGTTCAGCTGAGCACAACAACAGAGAGCCTAAAACCTGCCAggaactttctctctctctctctctctctctctctcgctcacacagacacacacacacacacacaccagactgaAAGACCACCATGCAACTGCCAGGCCTTGTGATAATGACTTTGGATGAGCATGAAAATAAGAAGATCTGAAAGACTCAAACTGTACTTTTATCCATACCGTGTAAAGATACAACaaacatgaagtgtgtgtttttcctctgcAACCTTTTAAGGAAATTGACGTcatatccagggtgtattcccacatcGCATCCAGTGATCTAcctccaccctgaccaggataaagagcttactgtAGATGTATGAACGAATGAAAAAAGTTTTGGAAGGTTACTTACTGAGAACTACACAGTCCCTAAATATTCACTGCAGGAACTGTGATCATTTTATCAAAACCTAAGGTAGATATTTAAAAAGGCCAGgttaaaaaaggtaaaaaggtTAGTCATGTTATAAAGCTTGCATTTGTACCAAATAGCAACTTTCAGTATGGAAATATCCATCCAGTCTCTCCACACTCTAGAGCAGACACAAGAACTAAAAAGATTCCTTGATTTCAAGCTTAGGAACTAAAAGTTCCTGGATGTGTCAAAGGTACCGAAATCCTGATCATTTCCTaggttcctgaaaaggttcctgtggtAGAAAGATGCTTACGAATGCACAGACAAACTATAGCAAAAGACCACCCTTAAAACAGAGATCACTTGTTTCACGGTGCTTAGGAGGAACTACGACCCTGGGTGCAGACTGATCACTTAACAGAGTAACACAGAATGTCAAGAGGACAGTCACCACCTgtatgacctttgacctcactTATTCCCTCATTTTCTCTCAGTTTATCTTCTTCACAAAAGACCTGTCACCAACATGTGAACTATCGGCACTATACAGAAAATGAGGCTACTAACATCTAAAAGAtggtttacatttatttataatagatATAGCGATATATAGAGATATCCAGCAATATTTCTTCAAATAGACTTTCTTCAAACATCAGGGCTCTTCGCTTTGTCCAGGTTCATTGTAAAATCCTAAAACAGATGGTTTCCCTTTCAAAAAGAGTTCCTATGAACTTTTAACCATTCAAGGAACCCTGAAGGTACACTTGAAAGTAGTACTAAGTAGTACTCGTGAAAAGGCCATTAAGCTCCAGGGTCTGTGTATGTTATGTTCACGTATGcagtttttttgctttaaaacaataaatatgacaaaaaaaccTTCTCTGGCTTGTTTTTCATGATTTCAGATTCACACTGGGgctaaaattaatgaacaatCTTAAATGACATGGATATGTAATAGTGATTACTGGATAAAAGATCTCCATTACTCTGATGTTCTGCTGATATGGATATGAATCACTacgtgatttttaaaaatagtgagAGTGATGTTAAAGGAGGACGACATGGCAGCTGGAAAAAATCAGCACGGATTTTCCAAttgaagaatattttaatcTCCCAAAGTTCTGTATATTTTGATCCCATTTTATCTaatcttttatgaaaacagaagaAGGTTCCAGTGTACACATCTCAACCAGAGAAAAGTCTGTAAAATAGTCAACTCTGTTCATGCTGAAATGCACCGCAGTAGGAGGTTTTTCATATTTAGtctcatgaatatttgatttctagaATTTGTGTGGTGAACCTAGTAGAAACAATTAATAATGAGTCAATATGAATTCATTTAGTTTGCACTATATAGTCTTGCTATAACTTACTATCTCGTGGAGAATGATGTTTTTTCAGGAGTAAAATGGGCTCCTAATGCCAAAATGCTGGAAGAAGatagatagtgagagagagagagacagagagagagcgagagagagtgtttCATTGCTGGTAGTCTTATTACAGCAATCTTCTAAAGATGATTCTCCAGGTCTTCCATGACATAACGCTGTAGATGTTAAGCAAACAGAGTTCTTGATACTTCATCATCATAAAGCTGGGTTTTCATTTATGATATGCTCTTGAGTGTGAGAAGAATCATCTGTAGCTTTGCATTGATCTTACTAAGAGCAgccgtgtacgtgtgtgtgggtTTAAGAGCGACTACTGGAGCCGAAGCTTCTGGCTCAAAGGTCTTATGAGGAATGTACAGTGTACCAGAGTGCAGCAAATTAGGATTAGATGCAAAACAGATCACAACTGAGTACAGCATTGCTTAAAAGTGTTCATACAGAGAtaacagtgtgtatacagtCCACATAAGTACATTACTAGGGTTGACACTTGCCATTCTTCCTCTCTGGACAAAACAACATTGTGGATTTTCTGCTCAATTTGAAATTAATGGCCTCaacatgaaaaatgtaacaaatccaacctttaaacaaatgaaatattatagCACCAACACACTAGCATTTTCAGCAAAAGCAGCACACTTGAGcaacatgatatttttttatgtaaggaataaaacatgcttataaggaataaaacatccaTGTTGTGTTCTTATAGGgaattaatcaacaacagggtgcgGTGATAaatctgagttactgttatcaccccaaaggtgattattttcctctaacagcacatcacaaagtgttttattcctctcatatcacagcaatttaccaacgattacaatttttgtaTATTAATCAATGACGCatcactttttatctgtttacagttacatctaatgttgtggaacatccgctaAAACAGGTTCCTGTTAATGCTTacatcgttccctcaccagcctcttgttcttcttcttgttctttctgAAAAATcgcaaagtgcaaagtcctctatTCTggagaaaattaaaagaaaaagtttcacctcaaagcactgacaaagcaagtttttcattgttaaacaagttttttaaaatcagtttatggTTAGGCTTAATGTATGTGGATGGTCTGCTGtacaatcagattcaagaattcagcagtgctgtggtttaagcACAAATAAAGCCCCGAGGACGTGTTGTTCCAGTGGCGCAAATTCACACAGCTGTTTGCTGTTAGATAAAGGCCATTCATGTCCTAAATCAAAAATGGTGTGTGCCCTTCCTCCTCTCTTGGTATGTACCAATTCTTTTTCATTCACatcaacacattcacacaaaatcaGCACATTTAAAACCACAGCTACAGTATAATGCTGTGCCAATGTAAACATCCTCCTACAGTAATCAGACACCACAGGCTTACTGAGCACGCTCAAAGAGAGCATGGTAAAAGGACTGAGTCAACATCTAAAACGTTGGTTGAATTGGTATATTTGGCAGCCCTTATTTAATTCATGCACTAAGCAGTTGCTTGGTTGtctatatatatactgtacgtatatatatatagaaacaCTAGCCCTGTTACACCCTCAACAAAACAACCCGTGCTAAATAAATTACCTATGAagtcagcttttatttatatacattaggGATGAACAGATAGTATGTTTTAAATGAAGATAAATACAGACACGAATAGGAGGCAGAGTATTTTACAAAGCTTATCAGAAAAGTTCGTATGTACTTTCATGTGGGAATGAGCTATAGATTAGATGTGAAACTCACGGGACAAACAGTGACCACGTTCATGGCACTGTGTAACACGTTCATTCATTCCTCATTAGTAACTGCTTGGTCAGGgccatggtggtttaaattaagctactagtttatttatatttagtttatttaggaAACAGAACTAAGTAAATTCAATAGAAATTAATATCActggcaggtacaaacaaaaataacagctggattcatttttaaaaaagtggtgCACATCTGTAGTTGAGAATAATTATGAAATGGAGTGaggtagctgaggttgaggaactgtcagagccagactTCATACACCACATTGATGCTGTTGATACTGCTTTGTATGTATTAGGGTTCAAACTGACTTTAAAATGGACACCTTCtgctttaggccacgcccacttctggtTTACAGATAGTGATACCTGTATGTCATTACACCCCTGACATACATACAAAAATCTGAACTTATCTTCTCACCATCTTGGATAGTAGATGTGCTTGTGGTATTAGCTCTAGTGTATGAGAATCTTATCTGGGAGATTCGGCACACGTTACGTTTCGGTACACCACTCACTGGCCACCAGTGTCGTAACTTAACAGGAAGCCAAAATGCTCCCATACACCAGACCTTATGGATATGGGGAAATCTTCCGGGTCCTGTTCACTTCTGTCCTTGCTGtttttaacaagctaatatgcTAGTATGCTACCCACTCACCTgactgtgtatgttttttttaacactagTAGGAGGAGCTACTTCTTCAGAAGAAGGAGCTTGATTAAGTTAAATTGTTTATTACACCTCACAACTCATCAACtattatgcagtctgttaaaTACTCAGATATATCGAATCGAGAGCCACGtctaaaagaataaaattatcTGTTCAGAACAGATGagcaaaaattacacaaaaaaatcaaacctaAATCCATGAAGTAACGCTGTTGAGTGTCATTAGGTTTACATGTAAACGACTGAGACGTCACCACGGCTGCAAGTTTCTGCAGGACATCTCACGCTATTACAGAGAGTAAAGGCTGGTTTATACTTGAAGCATAACTTTTCGTGTGCATGCAAAACAGCGGCATTGTTCTCACACTCTCGCTTACGTATCTTGTGTActtctggaggattaaaagcggcattcactagatggcacatcggcgccaaaacatccctgtttGTCTGGATTCCAAGTCTATTCTAGTGTTTAGCGATTACGTGCACAGTAACGttaaacacactcacaagctctgtttctctttaaaactttctgctgttggcgtgattgttgtcatgagctgcgtctcGAATTTAAAAACCCTTACCCtataaaagtatttactaatctagaagaTCCATAAGACTATATACAGATATTAGGTTTAAAGGCTACATAAGaggcttttaaaattcaaacactaactgtaactgGAAAACGGAGTAGTGGTCTGAATTATGAGTGTAATTATGAATGTAACTGCATGTCCATTACATccttgcaacagcttcctgatccagccatgagaatgatatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125998 True 6925 lncRNA 0.39 1 28698428 28705352

Neighbor

gene id symbol gene type direction distance location
gins2 gins2,psf2 coding upstream 230678 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 238251 28453060 ~ 28460177 (+)
mthfsd mthfsd coding upstream 474924 28215787 ~ 28223504 (+)
gas8 gas8,LOC108276428 coding upstream 483346 28206753 ~ 28215082 (+)
LOC113526563 LOC108264624 coding upstream 517225 28163685 ~ 28181203 (+)
cibar2 fam92b,LOC108442585 coding downstream 36683 28742035 ~ 28750741 (+)
si:ch73-103b9.2 c4h16orf46 coding downstream 68969 28774321 ~ 28778017 (+)
LOC117597519 NA coding downstream 815095 29520447 ~ 29550296 (+)
iqcg NA coding downstream 1011241 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 1401341 30106693 ~ 30126222 (+)
G106571 NA non-coding upstream 50245 28647963 ~ 28648183 (+)
G106561 NA non-coding upstream 64062 28634158 ~ 28634366 (+)
G106555 NA non-coding upstream 69835 28623127 ~ 28628593 (+)
G106551 NA non-coding upstream 81905 28616217 ~ 28616523 (+)
G106550 NA non-coding upstream 85664 28612125 ~ 28612764 (+)
G106688 NA non-coding downstream 18833 28724185 ~ 28724493 (+)
G106733 NA non-coding downstream 102080 28807432 ~ 28808212 (+)
G106788 NA non-coding downstream 173926 28879278 ~ 28879617 (+)
G106808 NA non-coding downstream 372876 29078228 ~ 29078598 (+)
G106867 NA non-coding downstream 439602 29144954 ~ 29145520 (+)
def8 def8 other upstream 536559 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 627743 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 732120 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 1152902 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 1483858 27211389 ~ 27214570 (+)
cmc2 cmc2,LOC107711752 other downstream 94112 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 1688908 30394260 ~ 30498315 (+)

Expression


Co-expression Network