cmc2 (cmc2,LOC107711752)


Basic Information

Item Value
gene id cmc2
gene name cmc2,LOC107711752
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28799464 ~ 28804072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126202
GATCAATGCACGCGCTCTGGCATGGTGGAGTGACAATTATCCGACATCGTGAAGAATAAATATCCTTTAATGgagattttaaattaaaaatatagcGTTATAAATCCACCGAAAACCAAAGacagGTACTCGTTAAACTCAGGATGCACCCGGACCTGTcaccacatttacacactgatgaGTGCAATGAACTGATTTCGCTGCTCAAACAGTGTCACAAAGAgCACAACTTCCTCCGGTTCTTTGGAACGTGTAACGATGTGGATCGATCGATGAGGGAGTGTCTTAACAAAGAGtaTCTGGCAAAGCGAGAACGCAGCAAAGCTCACGCAGAGCAGATGAGACAGCGGCTCAGGGAAGGACCTAAAGCTCAACCGTGAGATGGAAATTTTGGAAatagaaaatgttaaatatattcagAACTTTGGCTTTTTAGGAGAGATCTTCGGACTTCGTGGACGGCTGATGTGCTGCGGAGGATGTTGATCTATCATGGACATGGAAGAAatttaatttactcaaacaggaATAAAATCATAGATTATAGTAATTCTAATTATTACTATTGTACAGCTATATGTATAACCTCACAGCTACAAGCACTCAGAATCCCACTGATTCTATACTGTGTATGGGGCACAGTTACTTTTAAACGGATAAAGTGGGTTCACACTGATGGTTAAAATGCATTCTCTCATCGCGAAGATCAAACACAATTAAAGAAATGCATCCA
>XM_026914161.2
ATCTATCGGTCGAAAGATCAATGCACGCGCTCTGGCATGGTGGAGTGACAATTATCCGACATCGTGAAGAATAAATATCCTTTAATGgagattttaaattaaaaatatagcGTTATAAATCCACCGAAAACCAAAGacagGTACTCGTTAAACTCAGGATGCACCCGGACCTGTcaccacatttacacactgatgaGTGCAATGAACTGATTTCGCTGCTCAAACAGTGTCACAAAGAgCACAACTTCCTCCGGTTCTTTGGAACGTGTAACGATGTGGATCGATCGATGAGGGAGTGTCTTAACAAAGAGtaTCTGGCAAAGCGAGAACGCAGCAAAGCTCACGCAGAGCAGATGAGACAGCGGCTCAGGGAAGGACCTAAAGCTCAACCGTGAGATGGAAATTTTGGAAatagaaaatgttaaatatattcagAACTTTGGCTTTTTAGGAGAGATCTTCGGACTTCGTGGACGGCTGATGTGCTGCGGAGGATGTTGATCTATCATGGACATGGAAGAAatttaatttactcaaacaggaATAAAATCATAGATTATAGTAATTCTAATTATTACTATTGTACAGCTATATGTATAACCTCACAGCTACAAGCACTCAGAATCCCACTGATTCTATACTGTGTATGGGGCACAGTTACTTTTGGAGAGGATCTAAATCACTTATATTGGCTTAAACGGATAAAGTGGGTTCACACTGATGGTTAAAATGCATTCTCTCATCGCGAAGATCAAACACAATTAAAGAAATGCATCCACACTCCAGAAACTGCATTAATCGTGTCATTTATTAGATATCGTTCTTCCTGGCACACAACGAAGACACAGTATCCTACTGACACACACTGGAATGACGACTTCTAAGGCACCCtgaaatattcatataataatatatcgAAGGACAGGGACATTATACACTGCGCTACACGGCAGCTTTGATGctaaagaatagaaaaaaaaatacaccaggTAACGTTAAAAACTTCATAAGagtttatttctattaaaattaAAGGGAAAGCAAACCACTGCACGCTTTTGCTCAGTATACtcccaattttatttattatttttattatatcataccacagcgctgtcgaattct
>XM_034305076.1
gttacaaaaaaagaaaaggaaagcacAGACTATCCATAAATTCGACTGTTTTCTAAACGATAATTGCTTTGATTATACTTAtaaattttattgtgttttttctaCAAGGAGTCGGTACTCGTTAAACTCAGGATGCACCCGGACCTGTcaccacatttacacactgatgaGTGCAATGAACTGATTTCGCTGCTCAAACAGTGTCACAAAGAgCACAACTTCCTCCGGTTCTTTGGAACGTGTAACGATGTGGATCGATCGATGAGGGAGTGTCTTAACAAAGAGtaTCTGGCAAAGCGAGAACGCAGCAAAGCTCACGCAGAGCAGATGAGACAGCGGCTCAGGGAAGGACCTAAAGCTCAACCGTGAGATGGAAATTTTGGAAatagaaaatgttaaatatattcagAACTTTGGCTTTTTAGGAGAGATCTTCGGACTTCGTGGACGGCTGATGTGCTGCGGAGGATGTTGATCTATCATGGACATGGAAGAAatttaatttactcaaacaggaATAAAATCATAGATTATAGTAATTCTAATTATTACTATTGTACAGCTATATGTATAACCTCACAGCTACAAGCACTCAGAATCCCACTGATTCTATACTGTGTATGGGGCACAGTTACTTTTGGAGAGGATCTAAATCACTTATATTGGCTTAAACGGATAAAGTGGGTTCACACTGATGGTTAAAATGCATTCTCTCATCGCGAAGATCAAACACAATTAAAGAAATGCATCCACACTCCAGAAACTGCATTAATCGTGTCATTTATTAGATATCGTTCTTCCTGGCACACAACGAAGACACAGTATCCTACTGACACACACTGGAATGACGACTTCTAAGGCACCCtgaaatattcatataataatatatcgAAGGACAGGGACATTATACACTGCGCTACACGGCAGCTTTGATGctaaagaatagaaaaaaaaatacaccaggTAACGTTAAAAACTTCATAAGagtttatttctattaaaattaAAGGGAAAGCAAACCACTGCACGCTTTTGCTCAGTATACtcccaattttatttattatttttattatatcataccacagcgctgtcgaattcttgagtct

Function

symbol description
cmc2 Predicted to be active in mitochondrion. Orthologous to human CMC2 (C-X9-C motif containing 2).

NR:

description
COX assembly mitochondrial protein 2 homolog isoform X2

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K18172 CMC2; COX assembly mitochondrial protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU126202 False 733 lncRNA 0.41 5 28799659 28803718
XM_026914161.2 True 1125 mRNA 0.39 4 28799644 28804065
XM_034305076.1 False 1106 mRNA 0.38 4 28799464 28804072

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b9.2 c4h16orf46 coding upstream 21447 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 48723 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 331714 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 339287 28453060 ~ 28460177 (+)
mthfsd mthfsd coding upstream 575960 28215787 ~ 28223504 (+)
LOC117597519 NA coding downstream 716375 29520447 ~ 29550296 (+)
iqcg NA coding downstream 912521 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 1302621 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 1453996 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 1468472 30272544 ~ 30285534 (+)
G106688 NA non-coding upstream 74971 28724185 ~ 28724493 (+)
G106552 NA non-coding upstream 94112 28698428 ~ 28705352 (+)
G106571 NA non-coding upstream 151281 28647963 ~ 28648183 (+)
G106561 NA non-coding upstream 165098 28634158 ~ 28634366 (+)
G106555 NA non-coding upstream 170871 28623127 ~ 28628593 (+)
G106733 NA non-coding downstream 3360 28807432 ~ 28808212 (+)
G106788 NA non-coding downstream 75206 28879278 ~ 28879617 (+)
G106808 NA non-coding downstream 274156 29078228 ~ 29078598 (+)
G106867 NA non-coding downstream 340882 29144954 ~ 29145520 (+)
G107075 NA non-coding downstream 678162 29482234 ~ 29482464 (+)
def8 def8 other upstream 637595 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 728779 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 833156 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 1253938 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 1584894 27211389 ~ 27214570 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 1590188 30394260 ~ 30498315 (+)

Expression


Co-expression Network