G107075


Basic Information

Item Value
gene id G107075
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29482234 ~ 29482464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126561
caaacattagttttccagcacaaaatgaaacgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattacgtaagagacacttttcagataaaaacataatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaactgc

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU126561 True 231 lncRNA 0.39 1 29482234 29482464

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b9.2 c4h16orf46 coding upstream 704217 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 731493 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 1014484 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 1022057 28453060 ~ 28460177 (+)
mthfsd mthfsd coding upstream 1258730 28215787 ~ 28223504 (+)
LOC117597519 NA coding downstream 37983 29520447 ~ 29550296 (+)
iqcg NA coding downstream 234129 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 624229 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 775604 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 790080 30272544 ~ 30285534 (+)
G106867 NA non-coding upstream 336714 29144954 ~ 29145520 (+)
G106808 NA non-coding upstream 403636 29078228 ~ 29078598 (+)
G106788 NA non-coding upstream 602617 28879278 ~ 28879617 (+)
G106733 NA non-coding upstream 674022 28807432 ~ 28808212 (+)
G106688 NA non-coding upstream 757741 28724185 ~ 28724493 (+)
G107140 NA non-coding downstream 202910 29685374 ~ 29689816 (+)
G107216 NA non-coding downstream 440288 29922752 ~ 29923072 (+)
G107222 NA non-coding downstream 488414 29970878 ~ 29971093 (+)
G107223 NA non-coding downstream 489018 29971482 ~ 30064438 (+)
G107381 NA non-coding downstream 782500 30264964 ~ 30356549 (+)
cmc2 cmc2,LOC107711752 other upstream 678162 28799464 ~ 28804072 (+)
def8 def8 other upstream 1320365 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 1411549 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 1515926 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 1936708 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 911796 30394260 ~ 30498315 (+)

Expression


Co-expression Network