G107140


Basic Information

Item Value
gene id G107140
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29685374 ~ 29689816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126633
tttttttttttaagatatgcTGAAAAATCAGTGTCTCTTTATAATCACAGCCAGCATCCAGGTGGAGTTTCTCATTTAAGCATCATGTTTGTGAGAGTTTTCAGCAGCAGAACTCGTTTTtgtggtcatttttttaatattttaagttttaGCTTCTTATGAGATGAAGAGAGTAAATGCGGCAGCTCGGGTCGGTTAACGCTGTGGCTAAGCTCGACCTCGGGGGTTTTAGGTTAGCCTGGTCGTGGGAGTGATGCGGTCACGCCACGTGAGGTTGAGGGTGATGCAGCTCCACTCAGCGCTCGTTAGTGCAACCTGAACTGACAGCTTAGTGTTACTCGGGTTACACCGGTGTCTCGTTACTGCTGTAAGCGTGCCTGCCTGCGAGCCTCCTACAGCGTGTACACAAAAGATGAAACCCTGTATGCCACGACTCTGCCTCCAAGCACATCCACGCTAGCTTTCCTTCACCGCTCCAGACCTGACAACCCCTGAAGAGGAATAATGCCGAGCTGGTAAAAACGCAGCAAGCAGTAAAAACCGCAACGCAGTAGGTTTTCCATAAAGTCGTGCTCAAAAACTGTTTCCATGCATCTGCACTGACTAGCGCAGGAGAGCAaacagcaatgtttttttttttcaaataactATGACTTcaattaaaattacttttaaagtgttacatttcacacttcactataggaaatatttaatctttttttccccttattaaAAATTTCGTCCTTTGTTCCTCTTGATTTTCTATCCCATCCCAAATAAACAGAGATAAGcgattttaaatatatacacgtctaatgttagctaagttgaaTATACATTAATAGACTTTAATGGAAACCATTCTCCAGTGCCTGTGACAGAAAACGAGGACGCCGCGTCAGCGAatctttcaagcaggaaaatcGAGACACAAGTCGAAAGGAGAGCACCGGTCCCAAGATCACTACTGCAAGATGAGggaaaaggggcggggcttccaggggtgTCAGTTAACTACAGATCTTCAACCCAATTTTTCCCAAAAATCGCacatcataaaataattatttgtttgcGAGTTGAGGTCATCGTTGGAACGCACAATGTAAGCGCTCACGTTATCAGCGGCTGATTTTTTTACACGCCACTCCAACCTAAAATGGCCAccattaaagtttttttaaaatcaaaatctcATCCAAAAGTCACCGGTCGGAGGACGGCATAAAATAACGCCAAACTCGTGAAACAGCCACGAATATAATAGTGGCGATCGCTGAACCAAACAAAACACGTGGATTTACAAGAAGCGCGAGTTGTTGATTTGCGGCAGCAGAAAGACGTCTCTTTGACGTCTCATCCGAGCTCAACCGAGTCACAACGGAAATAAACAGAGAACGAATTCCAGCTTCCTGCATCCTTATTACACAAAGCTCTGCAGAAGTgtcattcattctctctttttttaagccACGAACAGCTTCAaactctttcactgtttaaaatgtgtttccTCCAGGCACAACAACGCTACGATTACACCGAGGACTCGTCTCTGTTTACGTGACACCATTTCTATGCGttctacacacacctcattttaatcCAGTATTTGTCATTTATTGTAAGCGCTTATTCTAGGAGGCGTGGCTGAACAAGTTTGATTATTattaggtcacatgaccatataTGAACATGTATGTAGGctgtacctgtgctaggaactcaaCAACGTACCTAAAATCCCTGGAAAAGTCACTTCTCTGAAACGTCCTTTTAACATCAtctatcatttttatattaactcATTTTGGTTTCAGTGTGAGATGATAGAAAAGCATGAGCGCTTCCTGGAGAGTCTTTACACATCGATTTAAAAGACAACAACTGAAATAAATCGATGTAACTCGGTAAAAAAAATAACGGATATTTTGAAACTGATAGCAAGGTGATTTGTTGTAACTCTGATccttttaaaatagtccttctctacatcTTCATCATTTGTGAATTAACGGTAGACCCGAACAAATGTGGTCACGTATTGATCGAAGGCTACGATAcggtatcatatcatatcataacaGATTCAGGGGCATTGTCAAACATCGAATAGTTGCCTTATTAATAAAAATCGTACTGTATGGAAGCCTGAAGTTTACATCTCCAGTCTATTCTGCAGAAAAAGCACTAAAACTCAACTCTTTTCCCCCACAGGATTTAATAAAACCTTTCCCAAGATTACCATTTCTATAAAACCTTTTACACTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126633 True 2272 lncRNA 0.41 2 29685374 29689816

Neighbor

gene id symbol gene type direction distance location
LOC117597519 NA coding upstream 135078 29520447 ~ 29550296 (+)
si:ch73-103b9.2 c4h16orf46 coding upstream 907357 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 934633 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 1217624 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 1225197 28453060 ~ 28460177 (+)
iqcg NA coding downstream 26777 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 416877 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 568252 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 582728 30272544 ~ 30285534 (+)
LOC117597588 NA coding downstream 614816 30304632 ~ 30305794 (+)
G107075 NA non-coding upstream 202910 29482234 ~ 29482464 (+)
G106867 NA non-coding upstream 539854 29144954 ~ 29145520 (+)
G106808 NA non-coding upstream 606776 29078228 ~ 29078598 (+)
G106788 NA non-coding upstream 805757 28879278 ~ 28879617 (+)
G106733 NA non-coding upstream 877162 28807432 ~ 28808212 (+)
G107216 NA non-coding downstream 232936 29922752 ~ 29923072 (+)
G107222 NA non-coding downstream 281062 29970878 ~ 29971093 (+)
G107223 NA non-coding downstream 281666 29971482 ~ 30064438 (+)
G107381 NA non-coding downstream 575148 30264964 ~ 30356549 (+)
G107387 NA non-coding downstream 671774 30361590 ~ 30429223 (+)
cmc2 cmc2,LOC107711752 other upstream 881302 28799464 ~ 28804072 (+)
def8 def8 other upstream 1523505 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 1614689 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 1719066 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2139848 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 704444 30394260 ~ 30498315 (+)

Expression


Co-expression Network