G107223


Basic Information

Item Value
gene id G107223
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29971482 ~ 30064438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126737
GGTTTTATTGAAAGGACACAGGAAGGTAGAGAAACCGAGACATGTAGCAGTAGATTAAGTCCTCAGTGCATGGCACATCATTCTCAGGGAGACGACTCACTgtgagtctgttttttttttcctttttctctttaaattcTTGCACCAAAAGCTTTCAGGTTGTTCAGTGATCAAAGTTGGCCAGCCAACTCGATTTACTCGATTTATACTAAGACTTCAGAATACAGAAAAGGGAagagtttaaattaaaagtacCACCACCACAAAAAAGAACCaaatctttacatttatatCTTCGCTCTTCAACAGTTCTTGCGTAATTTAAGAGGAATTTTAGTACCGGGTAATTCAAAACAGAACCAGTGTGATGTCAGATCCATATCCTTGCTTCTTTTATCAACTTTCGGCAAACTGTGGCCGAGAGTGAAGTGAATTAGAAGCTCGTGCATGTGATTCAACGAGTGAATGTGTCTCCGGCCTGTGGTGCAAGTCCACAAAGTTCTCAACTACAAATACCACAAATCAAAAGATGTCCACAATCTCTGGAGAAATCCCAAACAACTCAAAAGGATAAAATAACAGACGTgttattataaaaaagaaagaaagaaaagaccaGTACGGTTATAAACGAGAAACCTAAAGGTCTATAGTGCATGCCGTTGTACTAAGCTGCTGGATCTCAGGTCAAACTCGGACATTTGGGGTTCCTTCTCTACAATAGCAGTGAtacttacagtgtgtgtgtcagtgtgtgtgtcagtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126737 True 785 lncRNA 0.40 2 29971482 30064438

Neighbor

gene id symbol gene type direction distance location
iqcg NA coding upstream 247415 29716593 ~ 29724067 (+)
LOC117597519 NA coding upstream 421186 29520447 ~ 29550296 (+)
si:ch73-103b9.2 c4h16orf46 coding upstream 1193465 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 1220741 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 1503732 28461829 ~ 28467750 (+)
ddb1 ddb1 coding downstream 42255 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 193630 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 208106 30272544 ~ 30285534 (+)
LOC117597588 NA coding downstream 240194 30304632 ~ 30305794 (+)
b4galnt3b NA coding downstream 246795 30311233 ~ 30353488 (+)
G107222 NA non-coding upstream 389 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 48410 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 281666 29685374 ~ 29689816 (+)
G107075 NA non-coding upstream 489018 29482234 ~ 29482464 (+)
G106867 NA non-coding upstream 825962 29144954 ~ 29145520 (+)
G107381 NA non-coding downstream 200526 30264964 ~ 30356549 (+)
G107387 NA non-coding downstream 297152 30361590 ~ 30429223 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 388418 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 493185 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 664396 30728834 ~ 30729657 (+)
cmc2 cmc2,LOC107711752 other upstream 1167410 28799464 ~ 28804072 (+)
def8 def8 other upstream 1809613 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 1900797 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2005174 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2425956 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 329822 30394260 ~ 30498315 (+)

Expression


Co-expression Network