G107382 (LOC108264175,LOC108437702)


Basic Information

Item Value
gene id G107382
gene name LOC108264175,LOC108437702
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30452856 ~ 30455383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126907
tattttttttttataattaggttaaaaaggtaaaataaagtGTCATGAATGTGGCTAGAATGTGTTTCATTCTAGTTAGTGttgtttataaaggaaattaatGAGTATATCATAATAACGCATACTAAATTCTCAGAATATGGTGAATTTCTGATCAGAAAATTCAGACTTTTCATTAAAGACGTGTTTTCTGAGAGAGACGGAGTCAAAGCACACGTCACTAATCACACCAGCATCAATaaattatactattattattataatactattattatgattatgatactattatttttctgtaaacattattttacagGAAGTCTGAAAAGGGTAACTCCAATGACACCTAAATCATCCAAAAGAAAAAGGATTTCACAAGTAAAATAGAATTTAGTTAGAAGTTTAACTTATAACGCTACTGGTGCTGGTTGAAATGGCTGCTCAGTCTTCTGAACTTTGACCCTGGAAGCActtatcaacattttttttttgtgctttcaaAATATTAGCTTTTAACCAGCTAACTCCAATGACATGAAATTCAGGGACAatagttctttttaaaattgattttattctGCTGTTATGTATTTGATAGATCTCATACTTATGTTCAGTCTGACATTAAAAAGAATaaggaatatatatttttaaaagtctgCAAAAGCTTATAAAGCAACACAACTGGCTCACAAGGCAAGCTATGTTCCAGTACTTGGAAGTTTgagagaattttttaaaatatttacacaataatTAAGACTCAAACTATTTTTATTGCTTAGGAAAGTTTAAAATTATACAGTAATATCTGCTACTTGGGAGTTCTTGAAAGATTTTAAACTATAACTGCTTTATCACCATAttctgagaatgtgtgtgtgtgtgtgtcatgtcaCGGatgtgaagtgggcggagctttaAGCCTTTAAGTCCTTTTccaaaaaagagcaaaaaccaaaaacagtaaaataaacataattctgttgagttttgtttgtttgtttgttcatttcttttgctttaGTTTAAGAGGAGACATCTTACAGACGCTATGCATCCAAAAATCTGGAAAATTATTGACCAGAATTGTCATTTCTACCATTTGTTCCTGTATTAAACGGTAAACTGTAGAGCTAGGAACTGTAggaatatttacatatttcctAATTCACTAgatgcaaattaaataaaaaaaaagaaagaaaaagccttTGGTACAATTTATATAGTACATCAACGCAGAAAAAACAAACGCGAGGTCTTATATGTTATAAATATCTTCATGCACTGTAAAGGATaaaggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtaaacgGATCTTATTCCTTTTTAAACCAGTCAGACCAGATATCGTATGCAAGCAGATATTATAGTCCACGAgagtaggggtgtgtgtgtgtgtgtgttgtttgcagtcctttaatatttactgtatgcTCTAGAGTAAAGAAAGGAGCCTGATCTGCACACACAGCCACGCCACTCAGTcttgttttttccttcattagtggccctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatgtgtgtgtttaacactcACTCGACTACAGGGAAACTTCTGATTCAGTCAACAGTACGCACAgactctcactctctcgctctctctctctctctctctctctctctgtgtgtgtgtgtgtgttagtgtatgtgtgtgttagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgtgagagCGTTGACGAGGTCATCAAGCGGCGCCGTCTCCGAAGCCTCCAGCAGCCTGAAGGTGTGGCTGAAggtgatgaagtgtgtgaggaggGTGTTGAGGTGCGGGTGGATGTCCGCAGCCACGGCGTCTCTGTAGTGAGCGCTGTACAGGTGGGTCAGAGTTCggaacagcagcaggaacaCCTTCTGGACCAGGAACATGAATCCGTTTGGGAATTTTACAcctgcgtgcacacacacacacacacctgcccTGGTGGGAAAGACGTTTTCGTCTGTGAGCAGTTCCTGGATGTAGGACATGGCGTAATCTATATAGAGAGGAGCTGAACACTTCAACTTCTTCCcatgttcatccatccattcatacaccctacacacacacacacacacacacacacacacgcagaggttaaatctacacaacacacactagaAGCAATATATATTGTCATTATAGAGCTGATTCCTCTGTTAATAAGCTTTAATTATGTCCAGTGTGAATGTATG
>TU126908
tattttttttttataattaggttaaaaaggtaaaataaagtGTCATGAATGTGGCTAGAATGTGTTTCATTCTAGTTAGTGttgtttataaaggaaattaatGAGTATATCATAATAACGCATACTAAATTCTCAGAATATGGTGAATTTCTGATCAGAAAATTCAGACTTTTCATTAAAGACGTGTTTTCTGAGAGAGACGGAGTCAAAGCACACGTCACTAATCACACCAGCATCAATaaattatactattattattataatactattattatgattatgatactattatttttctgtaaacattattttacagGAAGTCTGAAAAGGGTAACTCCAATGACACCTAAATCATCCAAAAGAAAAAGGATTTCACAAGTAAAATAGAATTTAGTTAGAAGTTTAACTTATAACGCTACTGGTGCTGGTTGAAATGGCTGCTCAGTCTTCTGAACTTTGACCCTGGAAGCActtatcaacattttttttttgtgctttcaaAATATTAGCTTTTAACCAGCTAACTCCAATGACATGAAATTCAGGGACAatagttctttttaaaattgattttattctGCTGTTATGTATTTGATAGATCTCATACTTATGTTCAGTCTGACATTAAAAAGAATaaggaatatatatttttaaaagtctgCAAAAGCTTATAAAGCAACACAACTGGCTCACAAGGCAAGCTATGTTCCAGTACTTGGAAGTTTgagagaattttttaaaatatttacacaataatTAAGACTCAAACTATTTTTATTGCTTAGGAAAGTTTAAAATTATACAGTAATATCTGCTACTTGGGAGTTCTTGAAAGATTTTAAACTATAACTGCTTTATCACCATAttctgagaatgtgtgtgtgtgtgtgtcatgtcaCGGatgtgaagtgggcggagctttaAGCCTTTAAGTCCTTTTccaaaaaagagcaaaaaccaaaaacagtaaaataaacataattctgttgagttttgtttgtttgtttgttcatttcttttgctttaGTTTAAGAGGAGACATCTTACAGACGCTATGCATCCAAAAATCTGGAAAATTATTGACCAGAATTGTCATTTCTACCATTTGTTCCTGTATTAAACGGTAAACTGTAGAGCTAGGAACTGTAggaatatttacatatttcctAATTCACTAgatgcaaattaaataaaaaaaaagaaagaaaaagccttTGGTACAATTTATATAGTACATCAACGCAGAAAAAACAAACGCGAGGTCTTATATGTTATAAATATCTTCATGCACTGTAAAGGATaaaggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtaaacgGATCTTATTCCTTTTTAAACCAGTCAGACCAGATATCGTATGCAAGCAGATATTATAGTCCACGAgagtaggggtgtgtgtgtgtgtgtgttgtttgcagtcctttaatatttactgtatgcTCTAGAGTAAAGAAAGGAGCCTGATCTGCACACACAGCCACGCCACTCAGTcttgttttttccttcattagtggccctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatgtgtgtgtttaacactcACTCGACTACAGGGAAACTTCTGATTCAGTCAACAGTACGCACAgactctcactctctcgctctctctctctctctctctctctctctgtgtgtgtgttagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgtgagagCGTTGACGAGGTCATCAAGCGGCGCCGTCTCCGAAGCCTCCAGCAGCCTGAAGGTGTGGCTGAAggtgatgaagtgtgtgaggaggGTGTTGAGGTGCGGGTGGATGTCCGCAGCCACGGCGTCTCTGTAGTGAGCGCTGTACAGGTGGGTCAGAGTTCggaacagcagcaggaacaCCTTCTGGACCAGGAACATGAATCCGTTTGGGAATTTTACAcctgcgtgcacacacacacacacacacacacacacacacacttcaaattTCTATTTTCATGAGCAAAATCTACATAACCAGAGTCCTCTTACAAGTACACAAATATTCTGAAaccattttaaagaaaactatTGTTCACttcagaagtattggcacccctgcacctccattttaacttttatgctatgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacctgcccTGGTGGGAAAGACGTTTTCGTCTGTGAGCAGTTCCTGGATGTAGGACATGGCGTAATCTATATAGAGAGGAGCTGAACACTTCAACTTCTTCCcatgttcatccatccattcatacaccctacacacacacacacacacacacacacacacgcagaggttaaatctacacaacacacactagaAGCAATATATATTGTCATTATAGAGCTGATTCCTCTGTTAATAAGCTTTAATTATGTCCAGTGTGAATGTATG

Function

NR:

description
PREDICTED: MOB kinase activator 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126907 False 2302 lncRNA 0.37 2 30452856 30455383
TU126908 True 2506 lncRNA 0.37 2 30452856 30455383

Neighbor

gene id symbol gene type direction distance location
lmf2a lmf2,LOC108437435 coding upstream 26401 30410666 ~ 30426455 (+)
c2cd5 c2cd5,LOC107686569 coding upstream 44296 30365619 ~ 30408560 (+)
LOC117597544 NA coding upstream 73111 30378703 ~ 30379745 (+)
b4galnt3b NA coding upstream 99368 30311233 ~ 30353488 (+)
LOC117597588 NA coding upstream 147062 30304632 ~ 30305794 (+)
si:dkey-88e18.2 NA coding downstream 130400 30585783 ~ 30592140 (+)
vwf vwf coding downstream 173029 30628412 ~ 30666725 (+)
LOC113526339 LOC108264048 coding downstream 212893 30668276 ~ 30687719 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding downstream 234552 30689935 ~ 30699382 (+)
glipr1b LOC108264173 coding downstream 256390 30711773 ~ 30718146 (+)
G107387 NA non-coding upstream 23633 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 96307 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 388418 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 481763 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 529784 29922752 ~ 29923072 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 102240 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 273451 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 372693 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 392576 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 395158 30850541 ~ 30854105 (+)
cmc2 cmc2,LOC107711752 other upstream 1648784 28799464 ~ 28804072 (+)
def8 def8 other upstream 2290987 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2382171 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2486548 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2907330 27526123 ~ 27545526 (+)

Expression


Co-expression Network