G107387


Basic Information

Item Value
gene id G107387
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30361590 ~ 30429223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU126913
tgtttaacatgtatggaaggagtctccagtgtcagcgctttgtaacagtcagaggtaaagctgtaactttaagttttcatcttcaggacagaggagtttacgcttctttgcggtttctcgctaacatgaCAAGACTTGACGTGAGAATAATGAGTTTCAtcgacgttccacagcattaaacgtaactatattAAGATAGAAAGATAGCACGATGTATAATATTTCAATGAGTAAAGATTGCAgacaagttgctgtggtgtaagaggaataaaacactcagggacgtgctgttagaggaaaataatcaacttcggggtggtcaCAGTAACTCCGTTTCGTAACTCGGCACCGCACACGGCGTTTGTTCCGTACTGAAGATTTACAGTGAAATCATGACAGAAAAGAATTTAGTGAAAGTGAATGACGAGATCGTACTTGAACTCTTTGACCCAGGGCAGCATCCGGAGATCTTTGTCGttacacaggtgtgtgtagttTCCGTGTGTGTGCCAGGGGTAGAACGAGTGGAAGCGGATTATGTACagaccctgagagagagagagagagagagagagagagaagaatgtcGGAGAGATACTACATGAAGTCAACTATTCAGACAAAGTGAAGAGATTATTATTACGGTTTAATGTGTCGAGAGGAAACGCTGGATTCTGACCTCCTCAGGAATCAGACACTTGTTAAACTTCATCACTTGGTACAGATATTCTGTAATACAATgacattttattagtttatc

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU126913 True 760 lncRNA 0.41 2 30361590 30429223

Neighbor

gene id symbol gene type direction distance location
b4galnt3b NA coding upstream 8102 30311233 ~ 30353488 (+)
LOC117597588 NA coding upstream 55796 30304632 ~ 30305794 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding upstream 76056 30272544 ~ 30285534 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding upstream 96029 30258068 ~ 30265561 (+)
ddb1 ddb1 coding upstream 235368 30106693 ~ 30126222 (+)
si:dkey-88e18.2 NA coding downstream 156560 30585783 ~ 30592140 (+)
vwf vwf coding downstream 199189 30628412 ~ 30666725 (+)
LOC113526339 LOC108264048 coding downstream 239053 30668276 ~ 30687719 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding downstream 260712 30689935 ~ 30699382 (+)
glipr1b LOC108264173 coding downstream 282550 30711773 ~ 30718146 (+)
G107381 NA non-coding upstream 5041 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 297152 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 390497 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 438518 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 671774 29685374 ~ 29689816 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 23633 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 128400 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 299611 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 398853 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 418736 30847959 ~ 30848474 (+)
cmc2 cmc2,LOC107711752 other upstream 1557518 28799464 ~ 28804072 (+)
def8 def8 other upstream 2199721 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2290905 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2395282 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2816064 27526123 ~ 27545526 (+)

Expression


Co-expression Network