G107591 (calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510)


Basic Information

Item Value
gene id G107591
gene name calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30557623 ~ 30562901 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127154
CCTCTCAGGTGCAGGACACTCAGGTGTGTCACAATTCACTGCATACAGTTTACAATTTAAACACACAGGTATGTACAGAAACTTCAAACCTGGACAGAAGATTTTATTTCAGTCATACAGACGCACTGCGGAAAAATTCCAAAAATTCATTTGGAAAAGGAAGCCCGGGAAACACTGTGAATTTTTCAGactgaaaatgtgaataaaataaaaaaggcactaaaaaaaaaggaaatgttggTTTGACCGTGTTCATCATTTAACTCATGATTCAGGAAGAGAATGTAGtgacgaggaaaaaaaaaaaagcagcaatgcctcattataatacattatagcACACTTATGAAGGACTTAACACAATAAATCTGCTTCAACCTAAAATATTGTTAGTAAAATGTACGCAGTGGTTAATGCTCCGCTTGTGAACAGTACTCTTAATAAGCACCATTACATGTAGTGACAAAATAACTGTGACGTTCAGCAGATTTGCTACACAAACAATCCTATATTTCATCATCGCATGCCGTAGAGACGGAGTACACGATCCGTAATGCAGCAAAATCCTTCCGCACTCGGCTTCAGAGACCTGAACACTCCAAAAAAGCGTTTATACAAAATGAATTCGGAATACTTTAAGTGTTCAGtgcattaacacacaaacacacacacacacacacacacaattatgcaTCTATCTAAGGAATGAACTTAAAACGTCCAACGTAAAAACGAGCTAatttcatcactgattatttccttttccaaaaaaaaaactagaaaattGTAACTGTACATAACTCTCAGTTATGGAAGTTTGCACGATTGAGATTGTTTACGAGGAATCAGGAAATAAATTACAGTCCATTTCGCTTTTCTTCATGCGCAGAGGTTTGGGGATTAAAACTCGTCGTGTCTTACTAAAGCCTCGCCGAAATCCGTCGCTTGACTCCCGACGAACAGGTCGTATTTATCCACAATCTCCTGCTTCGTGAGCCGTCCGTCTTATCTGCGTCTGATTCGTACAGCAGGTGTTTGGCCTCAGCCTCGGCGTGATCGTAGTCTGATGGCAGAATCCAGTCTTTCGTCTCCTCCTTGTCCATCCGtccatctttatttttatctctgAACTCTGTGAACTGCTCTCGCTCCGTCTTCACCCACTCGGGCTCTGTGGAGTCTCCATCCTGACTGTACATatcacCGATGTACTCCTCCAGGTCGATGAACCCGTCTCCATTTTTGTCAATGTCCTCCATCGTCTCCTGATGACgagaaaaagcaaaattataacaataaaagtgcattttttttacacattataaaaACAGGAACAGGCCTAAAGCAGAACCTTGAGGTTCTCCTTTGTGTTCAGGTTCCAGGTCACCATGACGACAGTAAAAGGTGAACCAGCGGAAGATGAGCTCAGATTAACATCGCtcctttaattcatttaattaacgATAACAAACAAATCACTGTAACTGACTGTTTATGAAAATATAAGGGAACTAAAATAAGAAGCTATGATCAGTAAACATGATTAGGAAAATATCTTATatgcaaaaatatacaaatgagtCCCACAATAAAGAAACAATGCAGgttgagaaataaaacagccaatcagcaacaaaCAGTGCTTCTAGCTCCACCCCCAGCGTATCCTTGTACACCTGCCCCCCCCCGTGTAGAACCTGCAGCCGGGACGCACCAGAACCACGATGTCCTGCATGTAGCCGTACTCCTCAGGGTGGAGGAACGACGTAGCCGTATGTAGCGTTCTTGTACTCCTCCCAGGACACGTGTCCGTCTGAATCGAGGTCGTGAGCCTGCCACTGTCGGTCCACGTCTTCATAAATCCAGCGCTTCTGAGCGTGTTTAATCCAGTTCTTCATCTCGTCCACCGTCACGAAGCCGTCATGATCCTCATCGATCTTATTGACAATTTTACGAGTCTATCTTTGCTCTCTTCTGGTGTGAGCTGGTCGAAGGTTTTTGCCTCCTCCTGGCCGAGGAAGGCTTCGTGGTCGTAGTCGAAATTCTCCTCGTCGTCGTGCTCCTTGTTGCTGAGAGGAGCATCGTGATGGACTCGGTCCTTCTTCTCCATCGGTTTAGTGGAGATGTGAGCCACACAAAGCGCAACGCACAGCAGCAACGGCCTGAGATCCTTCCTGTCTCACTCCACTTCCTGTCTCACTCCACTTCCTGTCTCACTCCACTTCCTgtctcaggacagaggactctAACCTCACTCCTCGGGGGTTTTCTTCACAAGCCGGCGGAGGAACAAACGCGTCCCGGATGTAAACTATTAAACTTTAGTCACACTTCCTGTGCAGAACTGGagctctgaccaatcaggtgcTTCATACGGCTATGTCCCGCCTCCAGGGCCGCGCCTCATGTCACAACGCTAT

Function

symbol description
calub Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and melanosome. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; blood vessel; head mesenchyme; oocyte; and ventricular zone. Orthologous to human CALU (calumenin).
calu Enables calcium ion binding activity. Located in endoplasmic reticulum. Biomarker of colorectal carcinoma.

NR:

description
PREDICTED: calumenin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127154 True 2420 lncRNA 0.44 7 30557623 30562901

Neighbor

gene id symbol gene type direction distance location
lmf2a lmf2,LOC108437435 coding upstream 131168 30410666 ~ 30426455 (+)
c2cd5 c2cd5,LOC107686569 coding upstream 149063 30365619 ~ 30408560 (+)
LOC117597544 NA coding upstream 177878 30378703 ~ 30379745 (+)
b4galnt3b NA coding upstream 204135 30311233 ~ 30353488 (+)
LOC117597588 NA coding upstream 251829 30304632 ~ 30305794 (+)
si:dkey-88e18.2 NA coding downstream 22882 30585783 ~ 30592140 (+)
vwf vwf coding downstream 65511 30628412 ~ 30666725 (+)
LOC113526339 LOC108264048 coding downstream 105375 30668276 ~ 30687719 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding downstream 127034 30689935 ~ 30699382 (+)
glipr1b LOC108264173 coding downstream 148872 30711773 ~ 30718146 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 102240 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 128400 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 201074 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 493185 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 586530 29970878 ~ 29971093 (+)
G107629 bbs10 non-coding downstream 165933 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 265175 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 285058 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 287640 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 291712 30854613 ~ 30868459 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 59308 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 1753551 28799464 ~ 28804072 (+)
def8 def8 other upstream 2395754 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2486938 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2591315 27944790 ~ 27966308 (+)

Expression


Co-expression Network