G107629 (bbs10)


Basic Information

Item Value
gene id G107629
gene name bbs10
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30728834 ~ 30729657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127204
AGTACGGCCTCGGCGAGGAGTCTCCGGATCTCGGGGTCGCCATGGTTACTGTGCAGCAAGGAGTGATGGAACACAAACTCGAAAACTCCTCCCACGGGGATGACATCACCAGCGTTTAAAACACACTGGTGCAGGTTCGGACACGGCGAGTGGAGCTGCGAGGACGCGAGACGCTGCGAGGACGCGAGACGCTGCGAGGACGCGAGACGCTGCTCGTCAGGACGCGGTGAGACGTTgttgtgtctgtgagagagactCAGATGCTGCAGCATGGAGAACACCCACGGCTCACGCTCACGCTCTGTTCGAGCGGTCCTGCAGCGGGCGCGCACAGcaccagggtgtgtgtgtgtactgacgTGTGTGTGACCCCGACGTTAGCGTATCTGCGTCCTCCGAGCTGAAAGCGGCGGCAGTGTGTCAGCGTCCCGACGCGCATCAGTGGCTGCACTGTGAGCGTTTCTGCCGTGCTGAGTTCACACAGCAGGTCCAGCTGCCCCGGATCGCAGCAGTCCAGCACAGAGACGGTGTTCAGCCACGCCCACGCCAGCACGCGGTCCGGCTGCTTCACCGCCGACAACACGACGTTCACCTGGAGGCGTGCAGGATTGTCGCTAATCTCTCCTGTATGACGCTGTCACTCTGAACTGTCCAGTCCTCCTGAAACTGAATACTCACACTCTCATCATAACGTTCGTCTAATTTCTCATAAACAACCAGCGCCTTCACCGGACCGTCTGTCTCTTTCCAAACGGACCAATCACAGGGCAGGAGGAGACCTTCCACCACGCGTGATTGGGCGCTGTGTAGTCCCGACACGGCCG

Function

symbol description
bbs10 Predicted to enable ATP binding activity. Acts upstream of or within convergent extension involved in gastrulation. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 10. Orthologous to human BBS10 (Bardet-Biedl syndrome 10).

NR:

description
PREDICTED: Bardet-Biedl syndrome 10 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127204 True 824 lncRNA 0.60 1 30728834 30729657

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.17 LOC108264160 coding upstream 879 30720852 ~ 30727955 (+)
glipr1b LOC108264173 coding upstream 10688 30711773 ~ 30718146 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding upstream 29452 30689935 ~ 30699382 (+)
LOC113526339 LOC108264048 coding upstream 41115 30668276 ~ 30687719 (+)
vwf vwf coding upstream 62109 30628412 ~ 30666725 (+)
syt1b syt1,LOC108264166,LOC108427563 coding downstream 3802 30733459 ~ 30738572 (+)
terb1 terb1 coding downstream 30528 30760185 ~ 30795802 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 78481 30808138 ~ 30811975 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 86890 30816547 ~ 30825966 (+)
pgr pgr coding downstream 246052 30975709 ~ 30985960 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 165933 30557623 ~ 30562901 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 273451 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 299611 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 372285 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 664396 29971482 ~ 30064438 (+)
LOC113526871 NA non-coding downstream 98419 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 118302 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 120884 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 124956 30854613 ~ 30868459 (+)
G107660 ppp1r37 non-coding downstream 130541 30860198 ~ 30861847 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 230519 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 1924762 28799464 ~ 28804072 (+)
def8 def8 other upstream 2566965 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2658149 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2762526 27944790 ~ 27966308 (+)

Expression


Co-expression Network