LOC113526871


Basic Information

Item Value
gene id LOC113526871
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30828076 ~ 30829663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127253
GTGAAAGAGGATAAATACTGAGCAGAAGAGAAACTCggtcttttctttcctcttgaCTTCTTCATTCTGCAGAAGGAGCTGAAACTGAGAGCGCTTCGTGATCTGCTGCTCCAGGAGGATTTGGCCATGTAGCCACCGCTTGCATCTTTCCTATCtctggaggaggatgaggagttAAAACACATCTGCCAAGGGGTGTGGCACTCGGTCCTTCTGCGCCCCGTGTCAGACGTCATGTGGGGTGGCCACGCCCTCCCTGAGGGCACGGGACGCCCCCCTGCAGTCTGCACTCGGAGTCCAGTGGGTCTGCAGTGGACAGCGCCAGGTCTGCACTGACCTGCCAATTAAGCCCTAGATTCCAGAAGCAACCACAAAAAACCACGTAAAAGTTCACTTCTCGCTTCTGGTGTCTGTTGCTTGGTTGGCAGGTTCGTGGTTGGCCTGCCGTTGAACGAACAACCTTTTACTGTAGTTTCTTCAAAGCTGTACGCCATTTTccaactcaaaaaaaaaaaatctataaaaatagtaaaacaatGCAAC
>XR_003402817.2
GACTCACCATGGGCGTGTCTGAGGGTGAAAGAGGATAAATACTGAGCAGAAGAGAAACTCggtcttttctttcctcttgaCTTCTTCATTCTGCAGAAGGAGCTGAAACTGAGAGCGCTTCGTGATCTGCTGCTCCAGGAGGATTTGGCCATGTAGCCACCGCTTGCATCTTTCCTATCtctggaggaggatgaggagttAAAACACATCTGCCAAGGGGTGTGGCACTCGGTCCTTCTGCGCCCCGTGTCAGACGTCATGTGGGGTGGCCACGCCCTCCCTGAGGGCACGGGACGCCCCCCTGCAGTCTGCACTCGGAGTCCAGTGGGTCTGCAGTGGACAGCGCCAGGTCTGCACTGACCTGCCAATTAAGCCCTAGATTCCAGAAGCAACCACAAAAAACCACGTAAAAGTTCACTTCTCGCTTCTGGTGTCTGTTGCTTGGTTGGCAGGTTCGTGGTTGGCCTGCCGTTGAACGAACAACCTTTTACTGTAGTTTCTTCAAAGCTGTACGCCATTTTccaactcaaaaaaaaaaaatctataaaaatagtaaaacaatGCAACATAACA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127253 False 543 lncRNA 0.50 3 30828100 30829657
XR_003402817.2 True 573 lncRNA 0.50 3 30828076 30829663

Neighbor

gene id symbol gene type direction distance location
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 2110 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 16101 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 32274 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 89504 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 100121 30720852 ~ 30727955 (+)
pgr pgr coding downstream 146046 30975709 ~ 30985960 (+)
G107629 bbs10 non-coding upstream 98419 30728834 ~ 30729657 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 265175 30557623 ~ 30562901 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 372693 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 398853 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 471527 30264964 ~ 30356549 (+)
G107657 NA non-coding downstream 18296 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 20878 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 24950 30854613 ~ 30868459 (+)
G107660 ppp1r37 non-coding downstream 30535 30860198 ~ 30861847 (+)
G107663 ppp1r37 non-coding downstream 34647 30864310 ~ 30865934 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 329761 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2024004 28799464 ~ 28804072 (+)
def8 def8 other upstream 2666207 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2757391 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2861768 27944790 ~ 27966308 (+)

Expression


Co-expression Network