G107659


Basic Information

Item Value
gene id G107659
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30854613 ~ 30868459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127258
ctctctctctctctccctctctctcccctgagtgtgtgtgaaataccTATAGATCAGAATCTCCCATGCCTCTGCCCCTAATCACTATCATGTGaagaaattctctctctctctctctctctctctctctcatacacacacacacacacacacacacacacacacaccactcatgCCTGCTTGTAATCAGTCCTTAAAGTTAAAGTGAAACTGATTTAAAGTCTTTGATGCTGCTGTGATGTTGATTGTCCACATGGGGGCAGCGCTGAGCAGAACTGCACGTgtgtatttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttggttTGTGCCAGGCCCCGGGATTTTACTGAATCATCAGGAGGAATGTAGGGACAGATAACAGCATGAAATTTTCCGCTCATCAGagtcgcttaaaaaaaaaaaaaaaaaaaacctgttgaTTGTGTTTCATTGTGTAGTGACGATTTCATGACGATTTCATGACGGTTTCATGACGGTTTCGTGACgattttgtgacaatgtctcaGGAGTGAATGACGATCCGTGATCCAGCTGTTCTTAACTGTTTAATGAGTTTAAATCATCTGTAAGAAGAGTTCTGGTTTGGAGTCGAGGAGCTGTGGAAGGACGAGAGCGAGACTCTGGGCTCAGTGATGCTCACAGATTATTAACGCTCCCCCCTCGTCTCTGCACATGGTTCGACCCTGTGGGACACACATCACAGATTTAACCTACAaaccttaaaggaaaactccacatGAACAACTTCAACATTCACCTTTAGAATtaaaactgagtttttt
>TU127259
attacatgcatttatttgagagagaaacaaacaaaaatggccacacacacatctcattgTGGTCACCAGCACATTTCTGAGTCGTTGAACAGGTcagataaaaatttaaaaattaaagcattACAAACGTTGGATGGTTCGAGGCGAGGCACAGAGAACAGTGATGATGTGGACGTGCAGATCAACCTGcttatttcatatttcagcAAAGTGCTAAAGCTGAGAGCCAATCAGAGGCCAGAGActggaataaattaaaaactacatcatcatcatcataagtGAGCTATATTATAGGTGGAGCGTGAGTCTCTGGCTCCCCCTGCTGGCTGTCGCTGTAGTGTCACCCCACAGTACAATAGTGTcgtatttattcattcttacTCACTTACTCAACTTTCATCCTCTTTCATCCTCGCCCTACATATCTCATCTCCCTGAAACAGTGTGTTTACTCTCCATTCCCGATTTTATACATATAGAATCAACGTAAACCCCCTAAATATCTCCCTAGCcctaaaaaaagtataattgcTCTTTATATTATCTGAAAATATACACCAGTATGGGagaaaaaatctttaaaaaccAAATCCCTCAGTAACAACTAATAAAAAACCGACTGGGGAAAAGAGGACAGAAACATAAATcactcagaagaaaaaaaaaaaaaaactcattttaataaaataaatagaaaataaatgatttctgAAAGCAGCAAAATAAAGAAGACAATTAAAGGCGAGGTGTTGAACTGGAAAGGCAGGAAGAGACACGGGAAGAGCGACACACATTTCTGCCTGAACGTTTTAGTGTCATTTCTTTACGCGAGGAAAACATGAGTGATGAGGAAAGATCTGGAAAAATCAGCCAAAGCGGAAGAGACTCCCCAAATCCCAGATTTGGAACATTCACTTGGATTTCCAGAAGCCTTCAGAGTCGGAAAACTGAGATCCAGAAGATTAGAACATGATGCttaagatcacacacacacatacacacacacacacacacacacaaagagagagacacagatacacagagatagagagagagagagagagagagagagagagagagagaggagctcaAAGACTGGATCCTGAGCAGAACCTTAAAGAGcaggaacaaacaaaaatgatagacagaataatctctctctctctctctctctctcatgcacacacacacacacacacacacaca
>TU127260
attacatgcatttatttgagagagaaacaaacaaaaatggccacacacacatctcattgTGGTCACCAGCACATTTCTGAGTCGTTGAACAGGTcagataaaaatttaaaaattaaagcattACAAACGTTGGATGGTTCGAGGCGAGGCACAGAGAACAGTGATGATGTGGACGTGCAGATCAACCTGcttatttcatatttcagcAAAGTGCTAAAGCTGAGAGCCAATCAGAGGCCAGAGActggaataaattaaaaactacatcatcatcatcataagtGAGCTATATTATAGGTGGAGCGTGAGTCTCTGGCTCCCCCTGCTGGCTGTCGCTGTAGTGTCACCCCACAGTACAATAGTGTcgtatttattcattcttacTCACTTACTCAACTTTCATCCTCTTTCATCCTCGCCCTACATATCTCATCTCCCTGAAACAGTGTGTTTACTCTCCATTCCCGATTTTATACATATAGAATCAACGTAAACCCCCTAAATATCTCCCTAGCcctaaaaaaagtataattgcTCTTTATATTATCTGAAAATATACACCAGTATGGGagaaaaaatctttaaaaaccAAATCCCTCAGTAACAACTAATAAAAAACCGACTGGGGAAAAGAGGACAGAAACATAAATcactcagaagaaaaaaaaaaaaaaactcattttaataaaataaatagaaaataaatgatttctgAAAGCAGCAAAATAAAGAAGACAATTAAAGGCGAGGTGTTGAACTGGAAAGGCAGGAAGAGACACGGGAAGAGCGACACACATTTCTGCCTGAACGTTTTAGTGTCATTTCTTTACGCGAGGAAAACATGAGTGATGAGGAAAGATCTGGAAAAATCAGCCAAAGCGGAAGAGACTCCCCAAATCCCAGATTTGGAACATTCACTTGGATTTCCAGAAGCCTTCAGAGTCGGAAAACTGAGATCCAGAAGATTAGAACATGATGCttaagatcacacacacacacacacacacacacacacacacacacacacacacacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127258 False 830 lncRNA 0.44 3 30854613 30859896
TU127259 True 1209 lncRNA 0.40 3 30857934 30868459
TU127260 False 1036 lncRNA 0.39 2 30857934 30867021

Neighbor

gene id symbol gene type direction distance location
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 28647 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 42638 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 58811 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 116041 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 126658 30720852 ~ 30727955 (+)
pgr pgr coding downstream 107250 30975709 ~ 30985960 (+)
G107658 LOC108264165 non-coding upstream 508 30850541 ~ 30854105 (+)
G107657 NA non-coding upstream 6139 30847959 ~ 30848474 (+)
LOC113526871 NA non-coding upstream 24950 30828076 ~ 30829663 (+)
G107629 bbs10 non-coding upstream 124956 30728834 ~ 30729657 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 291712 30557623 ~ 30562901 (+)
G107677 NA non-coding downstream 30641 30899100 ~ 30899679 (+)
G107690 NA non-coding downstream 98267 30966726 ~ 30967031 (+)
G107697 LOC108264155 non-coding downstream 126131 30994590 ~ 31002241 (+)
G107698 NA non-coding downstream 127814 30996273 ~ 30998215 (+)
G107966 NA non-coding downstream 404773 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 356298 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2050541 28799464 ~ 28804072 (+)
def8 def8 other upstream 2692744 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2783928 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2888305 27944790 ~ 27966308 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G160290 NA non-coding NC_053126.1 CM020923.1 34088862 ~ 34089071 (-)
mexican tetra (Astyanax mexicanus) G160160 NA non-coding NC_035914.1 CM008317.1 22911559 ~ 22948189 (+)