G107664 (ppp1r37)


Basic Information

Item Value
gene id G107664
gene name ppp1r37
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30865397 ~ 30898060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127265
CGTGTCTCCACGGGTCCTTTGGTTCCACCGATCCGGACACAATGTCCTCGTCTGAGGGAAACGTGACCCTCTTGGCTCCGGGTTTGGGTCCGACTCCTTCCTGCTGAGCCGGAGACGAGGACGAGGACGGAGCCTCTGCGTTGGTCGAACTCGAGGGATCGGCTTCTGAAGGCTTGTCCGAGTCCTTATCCGTTTCAGACGCTACAGAACCCACACTGCTGCTCTGCTTGAGCACCGTCACCGGGTCCGACTCCAAAACTCCACTTTCGTCCAAACTCAAATCCACACCGATGTCCATGTCCTCATCGTCGTTCGCACTTCCAGTGGAAAAACGGGATTCCAGATCCTGCGCGCTACTTTCTTCAGGAACGTGCAACGGCACTGAAAGGACGGTTCCATTGTTCTTCTGAGTCGGCGGCTCTTCTTTATCGTTCTTATCCTCGTGTCCCGAGTCCGAAGCTTCCGCATCCTTGTCTATGAGCTTGATGCTATTCCGGAGGACGAGTTCCTCGGAGATGAGCGCTGTGGTGTGGTCATCATCAGACGCTTTCATTCTGGCATTGCATAAATCTAGTGCTTGATTCTCACCGTTCATCTTCTCATGTCATGAACACCACCAACTACTTTATAACTCTGTCCaataagtaatataatatactCAAGTTTCTAGAGGAGAACTTCAGAGGCTGATGGACGAGTGCAACATGGCAGCGCTCCGAACACAAACCCTAACAACACGGTGCAAATCCTGCAGGCAACTTCATTCCTTCTGCATTCattctcatcacacacacagtcacaatgTCGGATTCTCTCTTCGTCTGGAACATGGgaaaatttacttatttatttatttatatatttatatataaagtgcCTGAAACGTCcctgatttgacgtcactttcCCAGGTCAAGGTTATTGCTCCGTGCGCATttccaaaaatacacaaatatctctctctgagtctctgatTTTCAACAGATGTCTATTTGAGAACTATTTAAAGTCCGTTCTGAACCAAACCCGAaaatttaaaactgtattttccAGACAAACTCAGTAGTATTTGGACATTTTGTATTTGTCgggtgcaataatACTCACACACGGAAcggaacacaacacacaaagctAACGACACGGACAGCACAAATTCTACCTGTCCTGCTTACTCAAGTCCAGCAAAGCGTCCCGAATACATCCTCCCTCACTAGATCAGCGCACTACCTAGGGCGAG
>TU127266
tgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagcagtggaTGTGGACCCAGGCTGGCTCGGATGGCAGGCCGAACCTGGGCTGCTCTAGCGCGCGCTCGGAGGACAGGAGCAGCTCGGCATTGTGGTGTTTTCAGAAGGTgatgtctcctcacagctctGAGCGCTAACACACCACTTCATTTACATGGAAAGTCCTGAATAAGCAACTCTTTCAGGCCCAGACTGCCAGCTCGCTGAGGAGGGAtttctcacacactccagcATGTGACCCGGCTGTACAAGTCCACACGCAGATTCCCTTATAAACTCTTTATAAATGTGCACTTTGTCTCATCGCGGAGAGAAAAACACGGGCGTCATTAAGGTCGCTCCTGCTAACGTTTATAGCCTGCTAGCTCCACACACTCACCACCAAACCTCAGCTATAACCGccgctccacacacacacgcgtccTAGCGCCCAGCTCCCTTCATTTAGGATGAAAACTGTGTTAAATATCTGTTTAAACTCACACACGGAAcggaacacaacacacaaagctAACGACACGGACAGCACAAATTCTACCTGTCCTGCTTACTCAAGTCCAGCAAAGCGTCCCGAATACATCCTCCCTCACTAGATCAGCGCACTACCTAGGGCGAG

Function

symbol description
ppp1r37 Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in negative regulation of phosphatase activity. Is expressed in anterior axial hypoblast; hatching gland; and polster. Orthologous to human PPP1R37 (protein phosphatase 1 regulatory subunit 37).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 37

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127265 True 1240 lncRNA 0.48 2 30896224 30898060
TU127266 False 658 lncRNA 0.52 2 30865397 30898060

Neighbor

gene id symbol gene type direction distance location
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 39431 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 53422 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 69595 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 126825 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 137442 30720852 ~ 30727955 (+)
pgr pgr coding downstream 77649 30975709 ~ 30985960 (+)
G107660 ppp1r37 non-coding upstream 3550 30860198 ~ 30861847 (+)
G107658 LOC108264165 non-coding upstream 11292 30850541 ~ 30854105 (+)
G107657 NA non-coding upstream 16923 30847959 ~ 30848474 (+)
LOC113526871 NA non-coding upstream 35734 30828076 ~ 30829663 (+)
G107629 bbs10 non-coding upstream 135740 30728834 ~ 30729657 (+)
G107677 NA non-coding downstream 1040 30899100 ~ 30899679 (+)
G107690 NA non-coding downstream 68666 30966726 ~ 30967031 (+)
G107697 LOC108264155 non-coding downstream 96530 30994590 ~ 31002241 (+)
G107698 NA non-coding downstream 98213 30996273 ~ 30998215 (+)
G107966 NA non-coding downstream 375172 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 367082 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2061325 28799464 ~ 28804072 (+)
def8 def8 other upstream 2703528 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2794712 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2899089 27944790 ~ 27966308 (+)

Expression


Co-expression Network