G107690


Basic Information

Item Value
gene id G107690
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30966726 ~ 30967031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127294
TAAGGTTATTAGAGTAATTAATAACAGGCTGCAGAGGAAACTGATACTCACTGCAGTTACAGCTGTCACTCCTAATCCATCCATCACTtaacacatgaacacattaaacacatgaacacattaatacattaacacattaaacacattaataaatgtaaccCATTAGCCGCGGAGCTGCAGAGGAGGAAAGCCGGAAGCTGTGGGATTTGAGCTTGATGTAAATCTGCTACTCACCGGAT
>TU127295
TAAGGTTATTAGAGTAATTAATAACAGGCTGCAGAGGAAACTGATACTCACTGCAGTTACAGCTGTCACTCCTAATCCATCCATCACTtaacacatgaacacattaaacacatgaacacattaatacattaacacattaataaatgtaaccCATTAGCCGCGGAGCTGCAGAGGAGGAAAGCCGGAAGCTGTGGGATTTGAGCTTGATGTAAATCTGCTACTCACCGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127294 True 239 lncRNA 0.40 2 30966726 30967031
TU127295 False 230 lncRNA 0.40 2 30966726 30967031

Neighbor

gene id symbol gene type direction distance location
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 140760 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 154751 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 170924 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 228154 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 238771 30720852 ~ 30727955 (+)
pgr pgr coding downstream 8678 30975709 ~ 30985960 (+)
G107677 NA non-coding upstream 67047 30899100 ~ 30899679 (+)
G107664 ppp1r37 non-coding upstream 68666 30865397 ~ 30898060 (+)
G107659 NA non-coding upstream 98267 30854613 ~ 30868459 (+)
G107663 ppp1r37 non-coding upstream 100792 30864310 ~ 30865934 (+)
G107660 ppp1r37 non-coding upstream 104879 30860198 ~ 30861847 (+)
G107697 LOC108264155 non-coding downstream 27559 30994590 ~ 31002241 (+)
G107698 NA non-coding downstream 29242 30996273 ~ 30998215 (+)
G107966 NA non-coding downstream 306201 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 468411 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2162654 28799464 ~ 28804072 (+)
def8 def8 other upstream 2804857 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2896041 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 3000418 27944790 ~ 27966308 (+)

Expression


Co-expression Network