G107697 (LOC108264155)


Basic Information

Item Value
gene id G107697
gene name LOC108264155
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30994590 ~ 31002241 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127303
tctaaaataaaataaatgcgcTACAGTTTCGGTACCGTCGGTGCTGTGGAGTGATTGGACAGATCGGTCTGATCTCAGCGCAGCTCCGCAGCTCTGTGTGACATTTCTGTGAGATTTCCTCAGAGCAGGCGAGCTGTACGAGTCCTCCGAGTCTCCATCCGCCCGCCCCGCGTCCTCTCTGGAGCCCGAGTCCCGGCCCCGGGGCCCGCTGGAGGACAGAGACGACGGGAACGACGGCTTCTCTTTATGCAGAGCGCAGGAGCTCCGTTTGGACACGTTCTGCTCTGACGAGTGAGACGAGAGCGACTCCATGCTGCCCATCGCAGTGCTGCAGGAGCTGCTGCTGAATGtgtcacctgcacacacacacacacacacacacacacacacgcacacacacacacacacacgcacacacacacacacacacacacacacacaca

Function

NR:

description
PREDICTED: rho GTPase-activating protein 42-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127303 True 443 lncRNA 0.58 2 30994590 31002241

Neighbor

gene id symbol gene type direction distance location
pgr pgr coding upstream 8630 30975709 ~ 30985960 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 168624 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 182615 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 198788 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 256018 30733459 ~ 30738572 (+)
G107690 NA non-coding upstream 27559 30966726 ~ 30967031 (+)
G107677 NA non-coding upstream 94911 30899100 ~ 30899679 (+)
G107664 ppp1r37 non-coding upstream 96530 30865397 ~ 30898060 (+)
G107659 NA non-coding upstream 126131 30854613 ~ 30868459 (+)
G107966 NA non-coding downstream 270991 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 496275 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2190518 28799464 ~ 28804072 (+)
def8 def8 other upstream 2832721 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2923905 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 3028282 27944790 ~ 27966308 (+)

Expression


Co-expression Network