G107698


Basic Information

Item Value
gene id G107698
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30996273 ~ 30998215 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU127304
TatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctcTatccctctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTtatccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACtccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctatccatc
>TU127307
TatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctatccatctatt
>TU127308
TatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTC
>TU127309
TatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctattaatCCATCCTTCCACCTGTTATACtccctctatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTatccctctatccatctatccatctattaatCCATCCTTCCACCTGTTATACTCCCGTTAtccctctatccctctatccatctatccatc

Function

GO:

id name namespace
GO:0047961 glycine N-acyltransferase activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127304 True 388 lncRNA 0.42 3 30996273 30998215
TU127307 False 268 lncRNA 0.41 3 30996273 30996869
TU127308 False 272 lncRNA 0.41 2 30996273 30996588
TU127309 False 264 lncRNA 0.42 2 30996273 30998215

Neighbor

gene id symbol gene type direction distance location
pgr pgr coding upstream 10313 30975709 ~ 30985960 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 170307 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 184298 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 200471 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 257701 30733459 ~ 30738572 (+)
G107690 NA non-coding upstream 29242 30966726 ~ 30967031 (+)
G107677 NA non-coding upstream 96594 30899100 ~ 30899679 (+)
G107664 ppp1r37 non-coding upstream 98213 30865397 ~ 30898060 (+)
G107663 ppp1r37 non-coding upstream 130339 30864310 ~ 30865934 (+)
G107660 ppp1r37 non-coding upstream 134426 30860198 ~ 30861847 (+)
G107966 NA non-coding downstream 275017 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 497958 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2192201 28799464 ~ 28804072 (+)
def8 def8 other upstream 2834404 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2925588 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 3029965 27944790 ~ 27966308 (+)

Expression


Co-expression Network