pgr (pgr)


Basic Information

Item Value
gene id pgr
gene name pgr
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30975709 ~ 30985960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911260.2
tttgtgtatttttgtgtattttgtgtatttttgtatcaGTGTGTAATCCTATTTAAAGTGTTTGAACTGACTTTATGgtttgagagagacagacccaCATTTAGAGGAGTGAAGTCTGTGCTACTCCCAGGCTTCACCAGCAGGAGGGAGTTTTGTGGTTTTTGGGGAAGGTCCTCGTCCGCGTCTGGAGgcgcagcagcagcacaggATCCGCGGAACGGAAGCTGTAGGGAAGCTGCGGCTGCATGGAGACTGTGAGCAGCAGCATGTCGGATTCCTCACACAGCCCCGGAGTGAGTGATGTGATGGAGACGTACACGCAGGTGAGCTTCGGGCAGGTGAAGAACGGCGCGGATGTGGCGCGTGTGTCGTGCCTCGCGCGCAGTTTCGGTGACGTGGATCCGCTGTGCGTTCTGTCCGCCCCGAACCCCGGCGGCGCGAGCCAGGACCGCGCGGAGGACTTTCTGAAAATCGAACCGGGACCGTGGGAGGACATCACGGACAAAGCGTTCTCCTTCAAGGAGACCACGAACTTAGAAATCTCCACCACAGACGCGTGTAAGTTTATTAAAGACGAGCGGGAACCGGCGCTGATCACGGCTCCTCCGCGCGCCGCCTTCGACATTTCGCAGAGTATCGACGCGCTGGATATCGCCGTGTCCGCCGCTTCCCTCGCCCCGGTCCAGGCGCCGCTGATGGACTCCAGCGCGGGAGTCATGGTGGATATTCCTCAGCCGGGTGCGGTAGTGCCTCTGCCCCAGATGAAGCCCGAGGCGGCCGCTGCGCTCGGCTTTGACGCGGCGGCAGTGTGTAAGAGTCAGATGGGAGGATGGGACTCGCACCTGTGGTTTTCCGCCGCGCTGGCTGAGGAGCGGCCCGGGCAGATGAGCTTCTCACCTCCGGAAGGCATCCACAGCTCGGGCTTCATACAGCGCTCTCCCGCGGTGTTCAGCGCCTTCCCGGGCGTGCATACACAGAGAGCGTGTGTGATCTGCGGAGACGAGGCTTCGGGATGCCACTACGGAGTCCTGACGTGTGGAAGCTGCAAGGTGTTCTTCAAGAGAGCAGTGGAAGGACATCATAACTATTTGTGCGCCGGGCGGAATGACTGCATTGTGGATAAGATCAGGAGGAAAAACTGCCCTGCGTGTCGTCTCAGAAAATGCTACCAGGCCGGGATGATGCTCGGAGgtCGTAAGTTGAAGAGATTCGGTGTTCTGAAGGCCATGGGTGTCGGCCCGTCCCTGATGTTCCAGGGCCACGCTTTGGCCTCCATGCCATGCGTTCCTGGGATCCAAGAGCTGCAGTTTTCACCTCAATTTATAAACATCCTTGAGAACATTGAACCTGAGATGGTCTACTCGGGCTTTGATAACTCCCAACTTGAACTGCCACATGTGCTCCTGAACAGCCTgaacagactgtgtgagagACAGCTGCTGTGGATCGTCCGCTGGTCCAAGGCTTTACCAGGTTTCCGCAATTTACACATCACCGATCAGATGACCCTGATCCAGTACTCCTGGATGAACCTGCTGGTGTTCTCTCTGGGCTGGAGAACCTTCCAGAACGTCTCCACTGATTTCATGTACTTTGCTCCTGATCTCATCCTCAGCCATGACCGGCTGAGGACGACTCCGATATACGACCTGTGCTTGGCCATGCAGGTGATCCCTCAGGAGTTCGCAAGGCTGCAGGTCACCAGAGACGAGTTTCTGTGCATGAAGGCCCTGATGCTGCTCAACACcgttCCTTTAGAGGGTTTGAAGAGTCAAAGCCAGTTTGATGAGATGAGACAGAACTACATCCGAGAGCTGAGTAAAGCCATCCAGATGAAGGAGAAAGGTGTGGTGGGAAGCTCACAGCGTTTCTACCACCTCACCAAACTCATGGACTCCATGCATGAGATAGTGAAGAAGGTCAACCTGTACTGCCTCAGCACCTTCATCCAGGCCGACGCCATGAAGGTGGAGTTTCCCGAGATGATGTCAGAGGTCATCGCGTCACAGCTCCCGAAGGTTCTGGCCGGCATGGTCAGGCCCCTCCTCTTTCACGGGAAATGATGTCATGACACAGTGGAGTGGATTGTGGGATACGGACGAGTGCCTTTCAGCTTTCGGCTCAGAGACGAGATCtgggagaattttttttttttttatgctctCATGGAGAAAGATGTGTAATGGGTCCATCACTGCTTTTGTTCTGATGTTTAGAAGataaaaatttaacattttctgtaattGTCTCTCTGAGGAACATCTCAGTCCTACGGTATAATTCCCTGGTGGCAAATTTACAACTAAAACACCACTTTATATGTTacacttcatctttttttaaaaaaaaaaaaaaaaaaaaaggactccATCCCT
>XM_034305000.1
ACACCTTTTCACAGCCTTCACACCCTGGATGACTTCAGGACCAGTTTCTGTGTGAAATCCACTGATTTATCGGGTCAGAGTTCTGCAGGATGATTTGTTCATGTGGAAACTGGACTTCAGATTTAAATTTGGGAAATTCTGGTTCTgtcagggagagaaagagagaaagagtctgATGTCTGCTGGTGAAGCCAGGCTGGCTTTTAATATTTAAGCTAAATATACtttgacagacccaCATTTAGAGGAGTGAAGTCTGTGCTACTCCCAGGCTTCACCAGCAGGAGGGAGTTTTGTGGTTTTTGGGGAAGGTCCTCGTCCGCGTCTGGAGgcgcagcagcagcacaggATCCGCGGAACGGAAGCTGTAGGGAAGCTGCGGCTGCATGGAGACTGTGAGCAGCAGCATGTCGGATTCCTCACACAGCCCCGGAGTGAGTGATGTGATGGAGACGTACACGCAGGTGAGCTTCGGGCAGGTGAAGAACGGCGCGGATGTGGCGCGTGTGTCGTGCCTCGCGCGCAGTTTCGGTGACGTGGATCCGCTGTGCGTTCTGTCCGCCCCGAACCCCGGCGGCGCGAGCCAGGACCGCGCGGAGGACTTTCTGAAAATCGAACCGGGACCGTGGGAGGACATCACGGACAAAGCGTTCTCCTTCAAGGAGACCACGAACTTAGAAATCTCCACCACAGACGCGTGTAAGTTTATTAAAGACGAGCGGGAACCGGCGCTGATCACGGCTCCTCCGCGCGCCGCCTTCGACATTTCGCAGAGTATCGACGCGCTGGATATCGCCGTGTCCGCCGCTTCCCTCGCCCCGGTCCAGGCGCCGCTGATGGACTCCAGCGCGGGAGTCATGGTGGATATTCCTCAGCCGGGTGCGGTAGTGCCTCTGCCCCAGATGAAGCCCGAGGCGGCCGCTGCGCTCGGCTTTGACGCGGCGGCAGTGTGTAAGAGTCAGATGGGAGGATGGGACTCGCACCTGTGGTTTTCCGCCGCGCTGGCTGAGGAGCGGCCCGGGCAGATGAGCTTCTCACCTCCGGAAGGCATCCACAGCTCGGGCTTCATACAGCGCTCTCCCGCGGTGTTCAGCGCCTTCCCGGGCGTGCATACACAGAGAGCGTGTGTGATCTGCGGAGACGAGGCTTCGGGATGCCACTACGGAGTCCTGACGTGTGGAAGCTGCAAGGTGTTCTTCAAGAGAGCAGTGGAAGGACATCATAACTATTTGTGCGCCGGGCGGAATGACTGCATTGTGGATAAGATCAGGAGGAAAAACTGCCCTGCGTGTCGTCTCAGAAAATGCTACCAGGCCGGGATGATGCTCGGAGgtCGTAAGTTGAAGAGATTCGGTGTTCTGAAGGCCATGGGTGTCGGCCCGTCCCTGATGTTCCAGGGCCACGCTTTGGCCTCCATGCCATGCGTTCCTGGGATCCAAGAGCTGCAGTTTTCACCTCAATTTATAAACATCCTTGAGAACATTGAACCTGAGATGGTCTACTCGGGCTTTGATAACTCCCAACTTGAACTGCCACATGTGCTCCTGAACAGCCTgaacagactgtgtgagagACAGCTGCTGTGGATCGTCCGCTGGTCCAAGGCTTTACCAGGTTTCCGCAATTTACACATCACCGATCAGATGACCCTGATCCAGTACTCCTGGATGAACCTGCTGGTGTTCTCTCTGGGCTGGAGAACCTTCCAGAACGTCTCCACTGATTTCATGTACTTTGCTCCTGATCTCATCCTCAGCCATGACCGGCTGAGGACGACTCCGATATACGACCTGTGCTTGGCCATGCAGGTGATCCCTCAGGAGTTCGCAAGGCTGCAGGTCACCAGAGACGAGTTTCTGTGCATGAAGGCCCTGATGCTGCTCAACACcgttCCTTTAGAGGGTTTGAAGAGTCAAAGCCAGTTTGATGAGATGAGACAGAACTACATCCGAGAGCTGAGTAAAGCCATCCAGATGAAGGAGAAAGGTGTGGTGGGAAGCTCACAGCGTTTCTACCACCTCACCAAACTCATGGACTCCATGCATGAGATAGTGAAGAAGGTCAACCTGTACTGCCTCAGCACCTTCATCCAGGCCGACGCCATGAAGGTGGAGTTTCCCGAGATGATGTCAGAGGTCATCGCGTCACAGCTCCCGAAGGTTCTGGCCGGCATGGTCAGGCCCCTCCTCTTTCACGGGAAATGATGTCATGACACAGTGGAGTGGATTGTGGGATACGGACGAGTGCCTTTCAGCTTTCGGCTCAGAGACGAGATCtgggagaattttttttttttttatgctctCATGGAGAAAGATGTGTAATGGGTCCATCACTGCTTTTGTTCTGATGTTTAGAAGataaaaatttaacattttctgtaattGTCTCTCTGAGGAACATCTCAGTCCTACGGTATAATTCCCTGGTGGCAAATTTACAACTAAAACACCACTTTATATGTTacacttcatctttttttaaaaaaaaaaaaaaaaaaaaaggactccATCCCT

Function

symbol description
pgr Enables steroid binding activity and steroid hormone receptor activity. Acts upstream of or within luteinizing hormone signaling pathway and ovulation. Predicted to be located in nucleus. Is expressed in several structures, including brain; digestive system; gonad; steroid hormone secreting cell; and ventricular zone. Human ortholog(s) of this gene implicated in endometriosis; hyperprolactinemia; and obesity. Orthologous to human PGR (progesterone receptor).

NR:

description
nuclear progesterone receptor

GO: NA

KEGG:

id description
K08556 PGR, NR3C3; progesterone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911260.2 False 2375 mRNA 0.53 8 30976026 30985960
XM_034305000.1 True 2516 mRNA 0.53 9 30975709 30985960

Neighbor

gene id symbol gene type direction distance location
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 149743 30816547 ~ 30825966 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding upstream 163734 30808138 ~ 30811975 (+)
terb1 terb1 coding upstream 179907 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 237137 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 247754 30720852 ~ 30727955 (+)
G107690 NA non-coding upstream 8678 30966726 ~ 30967031 (+)
G107677 NA non-coding upstream 76030 30899100 ~ 30899679 (+)
G107664 ppp1r37 non-coding upstream 77649 30865397 ~ 30898060 (+)
G107659 NA non-coding upstream 107250 30854613 ~ 30868459 (+)
G107663 ppp1r37 non-coding upstream 109775 30864310 ~ 30865934 (+)
G107697 LOC108264155 non-coding downstream 8630 30994590 ~ 31002241 (+)
G107698 NA non-coding downstream 10313 30996273 ~ 30998215 (+)
G107966 NA non-coding downstream 287272 31273232 ~ 31273507 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 477394 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2171637 28799464 ~ 28804072 (+)
def8 def8 other upstream 2813840 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2905024 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 3009401 27944790 ~ 27966308 (+)

Expression


Co-expression Network