pdcd10a (pdcd10,LOC108410962,LOC107600227,LOC107686582,LOC103039132,LOC107662908,LOC108411198)


Basic Information

Item Value
gene id pdcd10a
gene name pdcd10,LOC108410962,LOC107600227,LOC107686582,LOC103039132,LOC107662908,LOC108411198
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21664634 ~ 21682323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913273.2
GCTTTGAAAAGACTACAAATTCTGTGTCCACACCTTTGCGAGTCGTCTGCAGTTCAAAGCAGAAAACCTCACCTATATTTTGTGGATTTTGGGCTAAAAAACTTCCGTCTTTTAGCCTGAACATTTCGGGAGATTATTTAGCGGACAAGCATCGGGGAGAGACAACTTTAAATTACGCAAACCAactctttatttttaacagaacAGTTGCAGACGTGGTTTTGGCTTGAACTGAGCACGCTCCGGAGTGAATGAATCCCCGCCCATCCTCACATTGCCACGACAACGATGACAATGGAAGAGAAGAACGAAGCAGAGACGGCCCCAATGGTTTCCATGTCGCTCTACGCCGTGATGTACCCCGTGTTCAATGAGTTGGAGAGAGTGAATCTGTCTGCAGCACAGACCCTAAGGGCTGCTTTCATAAAGGCGGAGAAGGAGAACCCGGGTCTCACACAGGACATCATCATGAAGATCTTGGAGAAGAAGAATGTAGAGATCAACTTCTCCGAGTCTTTATTACGCATGGCTGCAGACGACGTCAAAGAGTACATGATTGACAGGCCAGAGCGAGAGTTTCAAGAGCTGAACGAGAGAGCTCGAGCACTGAAACAGATCCTCAGCAAAATCCCGGACGAGATTAACGACAGAGTGCGCTTCCTGCAGACTatcaaagacatagcCAGTGCCATTAAAGAGCTGCTGGATACAGTCAACAACGTCTTTAAGAAATACCAGTATCAGAACCGAAGGGCACTGGAGAACCAGAAGAAAGAGTTTGTGAAATACTCCAAAAGCTTCAGCGACACTCTGAAAACATACTTCAAAGATGGAAAGGCAATAAACGTGTTTATCAGTGCCAACCGACTCATCCACCAAACCAACCTGATCCTCCAgaccttcaagacagttgcatAGGAGATTGATTCTGccttcaattttttaaaactacaatATAACcttcaaatggaaaaatgttGGGGactgtgtaatttattaatctCGTGGGCCAATTACTTTGGGATATTCATTCCTTTCTTCTTGTCTGATTTCTAATTTCCTTTAATAGCTGGGTTAAGAGCCAAGAATTTttcatgccattttttttttttttttttttttttgcctctttctttctctcccaccATCATCCTTCACTCCGAGTCTCCATTCTATTGttttaaaggaaaacatttcCAGACATTAGTGGAAAGAACAGCTGATGTTCTCTCTCCACATACTGGACTTTTCCTGTCCTGTCTAATACTCTGTGGAGCAAGAGAACTGGCAGACGGGAGattgtatatttaataaatatttggtagcagaaatattcaaataaatagaCTGCATCTTGTCTACTA
>XM_026913274.2
TATATTAGCGTGTGTAAAAGTACGGCTTAGTAGCGACTTAAATGACTGAATTACAAATATATCACTGTTGGACATAGAGTGTACTACCGAGGCTGTAGAAACTGTTATTTCAAACCCTATCAAGTGCACATATCAAGGGAGTAgagatacatttttattcagccCTAACTAGCTCAAAACTATTAGCTTAGCTAGCTCGCAGGTGTGGTACCATATCCTGCACTTCCTGCACATCCTGCGTGCCTGAGTTTTCCGGTCACAATCTAATTGGATGAATCTGAGGACCCAGCGCCGTCTGCCAACATTATAGTTGCAGACGTGGTTTTGGCTTGAACTGAGCACGCTCCGGAGTGAATGAATCCCCGCCCATCCTCACATTGCCACGACAACGATGACAATGGAAGAGAAGAACGAAGCAGAGACGGCCCCAATGGTTTCCATGTCGCTCTACGCCGTGATGTACCCCGTGTTCAATGAGTTGGAGAGAGTGAATCTGTCTGCAGCACAGACCCTAAGGGCTGCTTTCATAAAGGCGGAGAAGGAGAACCCGGGTCTCACACAGGACATCATCATGAAGATCTTGGAGAAGAAGAATGTAGAGATCAACTTCTCCGAGTCTTTATTACGCATGGCTGCAGACGACGTCAAAGAGTACATGATTGACAGGCCAGAGCGAGAGTTTCAAGAGCTGAACGAGAGAGCTCGAGCACTGAAACAGATCCTCAGCAAAATCCCGGACGAGATTAACGACAGAGTGCGCTTCCTGCAGACTatcaaagacatagcCAGTGCCATTAAAGAGCTGCTGGATACAGTCAACAACGTCTTTAAGAAATACCAGTATCAGAACCGAAGGGCACTGGAGAACCAGAAGAAAGAGTTTGTGAAATACTCCAAAAGCTTCAGCGACACTCTGAAAACATACTTCAAAGATGGAAAGGCAATAAACGTGTTTATCAGTGCCAACCGACTCATCCACCAAACCAACCTGATCCTCCAgaccttcaagacagttgcatAGGAGATTGATTCTGccttcaattttttaaaactacaatATAACcttcaaatggaaaaatgttGGGGactgtgtaatttattaatctCGTGGGCCAATTACTTTGGGATATTCATTCCTTTCTTCTTGTCTGATTTCTAATTTCCTTTAATAGCTGGGTTAAGAGCCAAGAATTTttcatgccattttttttttttttttttttttttgcctctttctttctctcccaccATCATCCTTCACTCCGAGTCTCCATTCTATTGttttaaaggaaaacatttcCAGACATTAGTGGAAAGAACAGCTGATGTTCTCTCTCCACATACTGGACTTTTCCTGTCCTGTCTAATACTCTGTGGAGCAAGAGAACTGGCAGACGGGAGattgtatatttaataaatatttggtagcagaaatattcaaataaatagaCTGCATCTTGTCTACTA

Function

symbol description
pdcd10 Enables protein N-terminus binding activity; protein homodimerization activity; and protein kinase binding activity. Involved in several processes, including positive regulation of macromolecule metabolic process; positive regulation of signal transduction; and regulation of cell migration. Located in cytosol. Colocalizes with Golgi apparatus. Implicated in cerebral cavernous malformation 3.

NR:

description
PREDICTED: programmed cell death protein 10

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001525 angiogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K18269 PDCD10; programmed cell death protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913273.2 False 1364 mRNA 0.42 8 21664634 21682323
XM_026913274.2 True 1467 mRNA 0.43 8 21664886 21682323

Neighbor

gene id symbol gene type direction distance location
golim4a golim4 coding upstream 46298 21590626 ~ 21618336 (+)
LOC113526575 LOC108264858,LOC108440598 coding upstream 201202 21340396 ~ 21463432 (+)
LOC113526557 zgc:86725,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 339367 21318185 ~ 21325267 (+)
LOC113526806 LOC108264295 coding upstream 353128 21255064 ~ 21311506 (+)
shkbp1 shkbp1,LOC107692479,LOC107656962,LOC107724139 coding upstream 539648 21108913 ~ 21124986 (+)
LOC113526346 wdr49,LOC108264614 coding downstream 7105 21689428 ~ 21733571 (+)
fam168a fam168a,LOC108264593,LOC107594362,LOC107600264 coding downstream 1200948 22883271 ~ 22934025 (+)
LOC113526468 arhgef17,si:ch211-248g20.5,LOC107660677,LOC107658857 coding downstream 1303086 22985409 ~ 23099891 (+)
trnak-cuu_22 NA coding downstream 1480784 23163107 ~ 23163179 (+)
LOC113526446 LOC108264850 coding downstream 1578299 23260622 ~ 23267820 (+)
G102903 NA non-coding upstream 159012 21504744 ~ 21505622 (+)
G102703 NA non-coding upstream 470230 21149084 ~ 21194404 (+)
G102585 NA non-coding upstream 659913 21004336 ~ 21004721 (+)
G102415 NA non-coding upstream 730540 20930187 ~ 20934094 (+)
G102374 NA non-coding upstream 1057040 20606602 ~ 20607594 (+)
G103130 NA non-coding downstream 366851 22049174 ~ 22049382 (+)
G103140 NA non-coding downstream 446046 22128369 ~ 22170834 (+)
G103246 NA non-coding downstream 844052 22526375 ~ 22526736 (+)
G103270 NA non-coding downstream 1009769 22692092 ~ 22692310 (+)
G103297 NA non-coding downstream 1184417 22866740 ~ 22869283 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 562418 21026027 ~ 21102216 (+)
prx NA other upstream 697363 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 815296 20844674 ~ 20849338 (+)
pid1 pid1 other upstream 978446 20638760 ~ 20686188 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 1571702 20076965 ~ 20092932 (+)
zbbx zbbx other downstream 80124 21762447 ~ 21813210 (+)
LOC113526422 p2ry6 other downstream 1260386 22942709 ~ 22983599 (+)
relt relt other downstream 1430761 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 1481323 23163646 ~ 23259257 (+)
serp1 NA other downstream 1890228 23572551 ~ 23575713 (+)

Expression


Co-expression Network