si:ch211-132b12.7


Basic Information

Item Value
gene id si:ch211-132b12.7
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20362330 ~ 20377332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913303.2
TCAGCTGACGCTAACTTAACCAACCTACGtcatcacacactcaaacacgTGGTACTGCTTAATTAACGCGCTCTGTTGTCTATCACCCCGAGCTAAATATCATTAACTGCACTGGGAGCTGTCGACTGCCTCGCGCCTGTCCCTGTACTCCACTCCACGTGCTCTGTTACGCAGCAATACCATTGCGTCACTCACGTCGGAGATTGGCGCATGCCTATTGGCCGCTGTGGATGTCGCTCATCAGAAGAGCCGCCCAGCACCCAGCTGAAACGAGCGGCTGCGTTAAGCACAGGCGCGCGCAACAAACCAgactgaaacaaaacacaaaacacaagaaGACATTTACAGCGCGAGCTGAGGgccAAGCCGTAGTATTCCATaagaatactgaatactgagcATTCAGTCGTTTTGCTGCTAGCTTGGTGGTGGTGCATGGGCCAACTAAAACCTGCAGAATGGAGTGAAGGAGAAACGATTGAGTGTCTTTAGAACCAAtacCCACAATGCCCCAGGAACCCAGTTGTGTGGGGAGGTGTGCTGCCCTTCCTGCCAGTAAAAATGCCAAGGACAAAAGCAACAGTGCTTCCCTGCTGTCCAGAACAAAGTTTCATACAGAGCAGGTGATGAATGGACGGAACTCCCGCTGCAGTTCTGAGAAAGACTCAGGTTATTCAGATGCTGGATCTGACTATCAGCAGACAGATGTAGATGATCAGCACAGTACTGTGACTGAGTTGAAGGGCCGTAAACCTCAGAGTACAGCAGATCAGGGGAACCACATCCTGGTATCGGGACAAGCGGAGTTCACACCCATGTTTATCAtcaaaaatgtagttttaaaacAGTCGGGACAGACAGGACAGGATCAGGTTCTCCAGTCTTTGTGGGGAACAGAGGGCACTAATTCTCAAAGTAATCTTCTGTTGCTGCAGCAGCCTGGCATCACTGTCTCTCCACTCCATgttcttacaccacagctacGAAGAGCTGAGAGCAAGAACAAAAAGGGCAAAAACACGTATCTCCCCATCCTCAACTCGTATCCCAGAATTGCTCCtaatctgaacaaaaaaaaaacagagaaacccCCAGCTAGCAGGGAGGGCAGTTCAGAGGAGCACAGCCTGAGTAAGAGAGTGTGCACTGAAGAAATTAAAGAGGTTGTGTCTGAGAAGCATCCAGACAAACAGCTGGAGAGCcacttcctgtctcactctcattctttcttACATTCACGCTCTTCCAGTGGTGACTTAGAACAGAGGAGTTCATGCCTCCCCCCTCCTGAACTAAAAATTATGGGGACATCAGCCTTCACGAGTCTTAGCTCGTCATCTGTTTCCACTTCAAAGACTTCCTCTCCATCCTTTCCATTTTCGTCTTGTTCTGAACCTGCAGCACATTTGCTCCCCACCAGTAAGGTAAGCTTTTCAGGAGGCTCAGTCCCAGACTCTACCATTGGCTTGACTCGGCACCGCCGCTTCCTCAACACAGTGGAGATACTGAGCCAGTCAGGACTGCTGGACATTACCCTAAGAACACAGGAGTTGCTCCGCCAGAGTGCTGCCACAGAGCAAAATATTGCTCAGCTGCGTCAGCATACACATCTGCTGTGCCAGGCTGTCCACGCAGGTTCCAAAGTGCCCACTTTGGAGAAAATACACAGAGTCATGGTTGAGTCTGGCTGCTATCCAAATCTCAGGAACTTGCTTTTCATGGGCAGTGATGATGGAGAGCTGGAGGCTGACAGCAACTCCAAAACTGATGCCATGATCACCTACAGATGTGGTTTTAATGGGCAGGGGGAAGTTGCACCTCCCTCCCCTCTTCTCACTATTGAGCCAGGCAGGGAAGGCAGAGATTTTCCATCAGCAGATCAGCAGGACTCAACATTTGGCATGGAATGGTTGAGGGCCCATGGGAAGCGCCCGCCTCACAAAAAGCTTCTCGTGCCTCCAGACAGCTCAACTTGTGGGGTGGCTGCTGTAGAAACTTACACAGAGTAACACTCAGTCACTGAGTCAAGTAGTGTaattataatatacacatacatacacccaTGGATTGCTCACCTAAGTCAGTGAGTGCTGGCCTTCACTGTGGAGAAACATTTTAGGTGGCATGTTTCAGCCATGGATTAATTTATGAACTGCACAGCttcatgacaagctgtttttctgttttcacagtTTATGGTATTTTAGGATATTCACAAGCACAGCATGTCCATCATTTTGTTGTCCTTTTCAGTTCAGCTTGTTTCCAGATTGTAATTTCTATCTATCcacttattataataatttcgTTACATCGACATATTAAATGGCACAATCAGGCCAGAATTGGCCATCGGGAAACTTTGCAGTGGCCTGATCTGTCTTGTGACTGGAATTGTCCTGTTCTTTGCCAAGTGGCTGGCAAATGCTGTAGTTCCTAGAAATTATGTTCTGTCCATATAGTCAAATTCAAGCACATAGCTAATTTTATCTTATTAGGCTGTATTAACCGCAGTATCACTATCTAGCAAGTAAAACCACAGCTGGCTGCATAATTATTAGACTATACAGCTgaacatatttttgttattttcaagATTGACCAAGAAAACGCACTAAAACTGAAGCCCTTTCAACAGGGCTGCAACTATGTAGCTAGCaactataatttataataaaaactgAAAGTAGTAGCCAACATTGATAGTCAGTGACTAGCTGCCTGTGTCAGAAGGTAGGCCTACACTTTCCCATCAGCCAAGTACAGGGAGCAAATTTACAGGCACAGGGAAAAcagaaagcaagcaagcaagaaatgaatgaatgaatgaatgaatgaaatgccaTGCACAAAGAAATGCCATGATCTTATTTTGTATTGTAGCTACATGTATGTGGGTCATTTATAAAATCACTTAAAATGCCCACCTATTTGTGAGACTGAATGCATCACTTTCTTTACTGTATTCATTTTCTTATTGTTAAAAGTAACACAACTCATGATTTTCTTTTGAGATACATTCACCAATCAAATCATTAGGAATCTCTTTCTAAAATAGGGTAAAACTATctgttctgagatgcttctCTGCTCACAACTTCtcaagagtggttatttgagttattggtGCCTTCCATGTCACCTTGAACCAGTTTGTCCATTCTgctttgacctctctcattaccAGTGCATTTCTGCTCACACAACTACTGCTAactgggtgttttttgtttggttatttttttgGCACCATTCAGTGTATAACAAGATCTGGAGATGGATATcaatgaaaatcccaggagatcagctgtttctgaaatactcaaaccagcctgtctggcgccatgccacagtcaaggttactgagatcacatttttcccattctgatgcttAATCTTAACCATAACTGAAGCTGTTCACCCCAgtttacatgattttatgcattaagTTGCTGCCACCTGATTAGATATTTGCgtgaatgagcagatgtacaggggttcctaataaattggtcGGTGAGTGTACATTACAGTAGGTGGTTAGTGGTCTCAAGGTTTGTTGTGGGTATATGGGGTGGTGTAAGTGGATTTGAGACTCCTGGCCTGAATTTTTGTCCCAGTCCAGCCTGAGGCACACGAGACATATATTAATTGTCTGATGGCTTCAAATGTGTTCGGTTACAATAGAAATACTACAGTAGAAAAACTGCACTGTCTGATATTTCTCtttcattagaaaaaaatccattataTGAGGTAATATATGGTATAGTTTGTGCTTTTAGCATCTGTAGTAATGTAGTGATTGCACTGTGGACTATTTGTCATCACACAATTACATGCGACTACAAATGGGTTTTATGCCTCTACATCACGATAGCCTGCTGGTGCTACATGACATCCTGTAAGTACTGGGACAAAAATCTCTTTCATACATGAACTTTCCCTTAACactaaaaaatgcaaaatgcttATGAAGGTTTTGCAGTAGAatcttttgttttgaatttgatcTTTTTCTGTAGTGTCcgtttcatttttgttttaatctattctataaacagtattaattaatgttaCTAAGGAATAATGTCTGGCTCTGTAtctgaatgttaaataatgatGTTTTTTGGTTCCCTGTGAAGTGAACTACTAGAGTTGATAACAGTTTCTGTTCCTTTGTTTAATCATGAACcatgtaataattatatatgtGAAATGTCTTAGAATGATTGGTGTTCTTTACAGTCTTGTACTCTGCATTACACTAAGGATTTTGGTCAATTGTGAGAGTTTTATGATGATACATAACccatttaatattatttctttattatatgtGTAATGATGTCTGGGAGGCTTGGTAAATGTCTTGTTTATTGCAGTTCATTGTTTAGTTATGCAAGAagtaattctttttattttctctatttggTGTTAAATCTTTATATAGTCCACTCTAAAAAATATTAGGAACAGCAAGGCccattctttgtttttgtgctaTACCCTGAGgacatttaagatttaagagatgatgatgataaaaagatgaatatgagacaat

Function

NR:

description
CLOCK-interacting pacemaker-like

GO:

id name namespace
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913303.2 True 4567 mRNA 0.42 5 20362330 20377332

Neighbor

gene id symbol gene type direction distance location
nectin1b nectin1 coding downstream 70007 20215142 ~ 20292323 (-)
LOC113526513 cxcr5 coding downstream 307894 20051332 ~ 20054436 (-)
pik3c2a pik3c2a,LOC108264692 coding downstream 865337 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 1028900 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1620606 18734427 ~ 18741724 (-)
ccnp NA coding upstream 5478 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 44941 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 83011 20460343 ~ 20464685 (-)
foxg1c NA coding upstream 93028 20470360 ~ 20471089 (-)
pglyrp5 LOC108264553 coding upstream 95847 20473179 ~ 20476270 (-)
G102434 NA non-coding downstream 2789 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 5733 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 71339 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 99190 20257332 ~ 20263140 (-)
G102225 NA non-coding downstream 268528 20092984 ~ 20093802 (-)
G102444 NA non-coding upstream 94539 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 101001 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 116925 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 201358 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 261539 20638871 ~ 20686185 (-)
LOC113527007 NA other downstream 382071 19980069 ~ 19980259 (-)
G101178 NA other downstream 2165524 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5004767 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6015322 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6799756 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 18534 20395866 ~ 20416574 (-)
G102566 NA other upstream 576270 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 618009 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1854116 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3213613 23590945 ~ 23610448 (-)

Expression


Co-expression Network