pdcd5 (pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235)


Basic Information

Item Value
gene id pdcd5
gene name pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28071684 ~ 28078887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913309.2
TTGACATCATCACATAGACTGGTCGTAAATTAGTTATTTTTTGCTGCATAAAATCTGTATAAGAAAACAaaaggaccttttttttttggaaaagaatCGTTGTCATCGTGCATCTCTAGGACGACTGCTTGATTGCTCTGGGTATGATTACTTCAGCCTGGCTGGCTTCTACCCCATTGCATATCATTTGTGCTCAGCCTGAGCCTTATAACTCTTATATTTTGCACTTAAAAAGTAAATTGCACATTGTTAGAAAATGGCTGATGAGGAATTGGAGGCTATCAGGCGGCAGCGCATGGCAGAGCTGCAGGCAAAACACGGGGGTATAGTGTGGAACCCGATGGAGCCGGACTCCTCCGGTGACCAAGGACAACAGGAAGCCAAGCAGAGagaaacagaaatgagGAACACGATACTGGCCCAGGTGTTGGATCAGTCGGCCCGCGCCAGACTGAGTAACCTGGCCCTGGTGAAGCCTGACAAAGCAAAAGCTGTGGAGAATTATCTGATACAAATGGCTCGGTTCGGCCAGCTCGGGGGAAAGATCTCAGAGTCTGGTTTAATAGAGATCCTTGAAAAAGTCAGTCaacaaacagagaagaaaacaaCTGTCAAGTTTAACAGGCGGCGAGTGATGGACTCGGATGAAGACGATGATTATTAAAACGAGTATTCGCTCCAGTCAGTGTGCTGGTGAGAGATGACTGCGCTACTCTGGATCTCGAGAAGCACCAGTGTCTGACCAAAGGCCCAATCTGTGCAGAGCATCCTGGGAAAAAGACTCCTGTTCCTTTGGGCACACAGGAACTTCTGATCCCTGTTGTTTCTATTATATCACGCATTTTCACTACCAGATTTTTtgccacaaaacaaacaattcaCAGTATAATTTCTATAGACTGCTCTGGGaatactgtttcttttttttttttttttttttagcatcaaAATGGAACAGGCCTCCTTGTCATCTCTTAATTTGTGGATCCCCTGTGCAActgtttacaataataaaaaaagccttGTATACAACGGTTACCTAA
>XM_026913310.2
AGTTATTTTTTGCTGCATAAAATCTGTATAAGAAAACAaaaggaccttttttttttggaaaagaatCGTTGTCATCGTGCATCTCTAGGACGACTGCTTGATTGCTCTGGGTATGATTACTTCAGCCTGGCTGGCTTCTACCCCATTGCATATCATTTGTGCTCAGCCTGAGCCTTATAACTCTTATATTTTGCACTTAAAAAGTAAATTGCACATTGTTAGAAAATGGCTGATGAGGAATTGGAGGCTATCAGGCGGCAGCGCATGGCAGAGCTGCAGGCAAAACACGGGGACTCCTCCGGTGACCAAGGACAACAGGAAGCCAAGCAGAGagaaacagaaatgagGAACACGATACTGGCCCAGGTGTTGGATCAGTCGGCCCGCGCCAGACTGAGTAACCTGGCCCTGGTGAAGCCTGACAAAGCAAAAGCTGTGGAGAATTATCTGATACAAATGGCTCGGTTCGGCCAGCTCGGGGGAAAGATCTCAGAGTCTGGTTTAATAGAGATCCTTGAAAAAGTCAGTCaacaaacagagaagaaaacaaCTGTCAAGTTTAACAGGCGGCGAGTGATGGACTCGGATGAAGACGATGATTATTAAAACGAGTATTCGCTCCAGTCAGTGTGCTGGTGAGAGATGACTGCGCTACTCTGGATCTCGAGAAGCACCAGTGTCTGACCAAAGGCCCAATCTGTGCAGAGCATCCTGGGAAAAAGACTCCTGTTCCTTTGGGCACACAGGAACTTCTGATCCCTGTTGTTTCTATTATATCACGCATTTTCACTACCAGATTTTTtgccacaaaacaaacaattcaCAGTATAATTTCTATAGACTGCTCTGGGaatactgtttcttttttttttttttttttttagcatcaaAATGGAACAGGCCTCCTTGTCATCTCTTAATTTGTGGATCCCCTGTGCAActgtttacaataataaaaaaagccttGTATACAACGGTTACCTAA

Function

symbol description
pdcd5 Predicted to enable DNA binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human PDCD5 (programmed cell death 5).

NR:

description
programmed cell death protein 5-like isoform X1

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K06875 PDCD5, TFAR19; programmed cell death protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913309.2 True 1043 mRNA 0.44 7 28071684 28078887
XM_026913310.2 False 985 mRNA 0.43 6 28071715 28078887

Neighbor

gene id symbol gene type direction distance location
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding upstream 8535 27990564 ~ 28063149 (+)
pdpr pdpr coding upstream 153536 27902771 ~ 27918148 (+)
LOC113526868 rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858 coding upstream 180424 27889761 ~ 27891260 (+)
nip7 nip7 coding upstream 208266 27860028 ~ 27863418 (+)
nob1 nob1 coding upstream 216919 27846818 ~ 27854765 (+)
mvda mvd,LOC106562275 coding downstream 2110 28080997 ~ 28088425 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding downstream 10491 28089378 ~ 28095826 (+)
tcf25 tcf25,LOC106562269 coding downstream 19509 28098396 ~ 28114961 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding downstream 40137 28119024 ~ 28123920 (+)
LOC113526844 tubb3,tbb3,LOC108431516,LOC107552791 coding downstream 54955 28133842 ~ 28141732 (+)
G106118 NA non-coding upstream 342523 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 468950 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 573054 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 837460 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 926653 27141845 ~ 27145031 (+)
G106343 NA non-coding downstream 18842 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 154920 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 311311 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 351116 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 490583 28569470 ~ 28571760 (+)
uraha LOC108264586,LOC108417536 other upstream 999 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 105376 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 526158 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 857114 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1238257 26830978 ~ 26833427 (+)
def8 def8 other downstream 67376 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 720577 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2315373 30394260 ~ 30498315 (+)

Expression


Co-expression Network