serpini1 (serpini1,LOC108410963,LOC107705789,LOC107735309)


Basic Information

Item Value
gene id serpini1
gene name serpini1,LOC108410963,LOC107705789,LOC107735309
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21641638 ~ 21664327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913317.2
tatttatatttatatatacagcagTCAGAGGCACCTGCCTCCGTGTAGTGAAGGACgaacgtgagagagagagagagagtgcaggaTATTTGCATCCATTTCGTCTTCAACATCTTTAAACAGACGctctaGTCTCTGTCGTCCACCATGTTGGCTGTCGGACTCTTCGTGCCCCTACTGTTGCTACGGGTTGGCTGTTGCCGGGCGACCGAAGTTCCAGAGGATGCAAGTGCCGAGTTCTGGGTCAGACTGTACCATCAGCTCCAGATGGCAGGGACCGATGACAACATCATCTTCTCTCCACTGAGCGTGGCGCTAGCGCTGGGTATGGTGGAGCTCGGAGCTCGAGGGTCCTCACTGCAGCAGATCAGACAGGCTGTGGGTTACACACAGTACAGAGAAGACGAGGAGTTCGCTGTCCTCAAGAACCTAACCCAGGCTCTGATTGTAGATGAGGCCCAGTACGTGGTGCATTTGGCAAACTCACTCTTCCTGCAGACCGGTGTTCACTTTAACCCTGAGTTCCTAAAGCTCATTAAGCATTATTTCCATGCTGAAGCAGAAACAGTGGACTTCAACGAGTCAGCTGCTGTGGCTCAACACATTAATGCCTGGGTCCAGAACCACACTGCAAATAAGATTCATGACCTGGTTTCTGCGGAGGATTTCAGCAGCTTGACaagaataacactgattaacGCGGTGTACTTCCGAGGCAGCTGGAAGAATCAGTTTCGACCTGAAAACACAAGAACATTTTCCTTTAGTAAAGATGATGGCAGTGAGGTGCAAACGCTGATGATGTACCAACAGGGTGACTTTTACTACGGTGAGTTCAGCGATGGCAGCTCAGAGGCAGGAGGAGTGTATCAGGTGTTGGAGATGCCATATGAAGGTGAAGACATGAGCATGATGATTGTTTTGCCAAGACAGGAAGTTCCGCTGGCCTCATTAGAACCGATCATCAAGGCCTCGCTGATTGAGGACTGGGCCAATAACGTCAAGAAGCAGAAAGTGGAGGTTTACCTGCCCAGGTTTAAAGTGGAGCAGAAGATTGACCTGAGAGATGCATTACAGCAGCTCGGCATCAAGAACATCTTCACCAAAGAAGCAGACCTGTCGGCCATGACAGCTGACACagaagAAGGGAGGGATCTGTTCATCGGGAAAGCCGTACAGAAGTCTTACCTGGAGGTGACAGAGGAGGGAGCGGAGGGAGCTGCCGGATCAGGAATGATTGCTCTGACAAGGACCATGGTGTTATACCCTCAGGTTATGGCTGATCATcccttcttcttcatcatccgGAACAGGAAGACAGGGTCCATCCTTTTCATGGGTCGAGTCATGAACCCAGAGGTCGTCGATCCCTTCGATCCTGACTTTGATTCTGTTTAATGCACCATGAATAGAAAGTAACGAGGCCCAAATAGCGCCAATGCCATGTATTTTCCCCTTCATGGTTTTCTACAGGGAGAACCCTGCATACGCAAATTATACTCTACATCATATGTGATTGTATTTTGATACTCTCAGCTTTAACCACAGGAGCAGATGTTGTAAATATATCTGAGATATCGGTCTCCGTGGCCATGATGGTAAAAGCAGCACAtgcatttatacatatttattgaGCTAATTAACTGCATTTCTTTTTCACCAGCCTCAGAGTATGCACTCTTCTTTACTGtaaatttgctgttgtgtttacaAAGTAGATATTTATTGAATATATACGTGCAGTTTTCtcttacttctctctctctcttgctttctatctttttcctcactgttctgAATCTTAGTATTTTTAATCTTCAATGTGGCTGAAGTACTGCTGAAATATTGACATGCCTTATAAGTTTTCAATTTCATGAATGTACAGTTACGGAAGCAGGGTTACCATGGTGACTCAGTATGCAGACCATCTGTTTGGTGTACAGGGATTTGAATAAGAGACACACCAGCTGTATTCTtgatttcagaaataaatatgaatgtggaaaaatct

Function

symbol description
serpini1 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Is expressed in hypothalamus; lapillus; midbrain; otolith; and telencephalon. Human ortholog(s) of this gene implicated in familial encephalopathy with neuroserpin inclusion bodies. Orthologous to human SERPINI1 (serpin family I member 1).

NR:

description
PREDICTED: neuroserpin

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K23412 SERPINI1; neuroserpin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913317.2 True 2011 mRNA 0.46 9 21641638 21664327

Neighbor

gene id symbol gene type direction distance location
LOC113526476 LOC108263963 coding downstream 7081 21623853 ~ 21634557 (-)
ppfia1 ppfia1 coding downstream 66792 21495122 ~ 21574846 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 149157 21467974 ~ 21492481 (-)
LOC113526809 ltbp4 coding downstream 392135 21149063 ~ 21249503 (-)
esrrd LOC108263916 coding downstream 504357 21127948 ~ 21137281 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding upstream 672433 22336760 ~ 22341441 (-)
LOC113526884 NA coding upstream 1485781 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 1494405 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 1633028 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 1669850 23334177 ~ 23340381 (-)
G102808 NA non-coding downstream 322086 21318140 ~ 21319552 (-)
G102809 NA non-coding downstream 329170 21309303 ~ 21312468 (-)
G102691 shkbp1 non-coding downstream 516683 21123315 ~ 21124955 (-)
G102600 LOC108264595 non-coding downstream 637858 20995525 ~ 21003780 (-)
G102458 NA non-coding downstream 955453 20638871 ~ 20686185 (-)
G103099 NA non-coding upstream 131446 21795773 ~ 21796243 (-)
G103156 LOC107737118 non-coding upstream 559258 22223585 ~ 22224021 (-)
G103158 NA non-coding upstream 560002 22224329 ~ 22224564 (-)
G103159 NA non-coding upstream 563301 22227628 ~ 22227863 (-)
G103161 NA non-coding upstream 564058 22228385 ~ 22228716 (-)
sertad3 sertad3 other downstream 628538 20995341 ~ 21013100 (-)
G102566 NA other downstream 674728 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 1225064 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1661379 19980069 ~ 19980259 (-)
G101178 NA other downstream 3444832 18187447 ~ 18196806 (-)
si LOC108264758,LOC108431149 other upstream 567121 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 1926618 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 1984357 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2068543 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 2815975 24480302 ~ 24574675 (-)

Expression


Co-expression Network