psmd8 (psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529)


Basic Information

Item Value
gene id psmd8
gene name psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19279150 ~ 19283703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913320.2
ATATTTCACGACAGTTGCAAGCCGTATCAGCGCGCGCCCCGTGCCGTACATTTTGCAGAATCACTATGGCGTCTGTGTTGAAAGAGACCGTCGGCTTGTATGAAACCTTGAAAGCTGAATGGAATAAGAAAAATCCCAATTTAAACAAATGCGGGGAGCTACTGAGCAAGCTCAAGATTTCGCTTCTGGAATTGAATTTTTTACCAACCACCGGGCCCAAACTCGCCAAACAGCAGCTGATTTTAGCCCGCGATGTGCTGGAAATTGGAGCCTTATGGAGTATCCTGAAGAAAGACATCCCCTCCTTTGAACGATACATGGCTCAGCTGAAGTGTTATTATTTTGATTACAAGGATGAGCTGCCAGAGTCAGCTTACATCCACCAACTGCTGGGTCTAAATCTGCTCTTCCTGCTCTCACAGAACAGAGTGTCAGAGTTTCACACAGAGCTGGAGAGGCTGAGTGCTAAAGACATCCAGACCAATGTCTACATCAGGCACCCTGTTTCATTAGAGCAGTACCTGATGGAGGGCAGCTACAACAAAGTTTTTCTTGCAAAAGGGAATATTCCTGCTGAGAGCTATACATTCTTCATAGACATTCTTCTTGACACTATCCGtgACGAGATTGCAGGTTGCATAGAGAAGGCATATGAGCAGATTCAGTTCAGTGAGGCGACAAGGGTGCTTTTCTTCTCCTCGCCAAAAAAGATGACAGAATATGCCAAGAAAAGAGGCTGGACACAGAGCCCTGATGGTTACTACTCTTTCAGCCCTCAGCAACAGCGGACAGAGGAAGTAACTATTCCTTCAACAGAACTGGCCCAACAAGTCATTGAATATGCAAGACAGCTTGAAATGATTGTGTAACTCGGTTACATATGAACCCCGTAACTgctaccaacacacacacttactttagaTGGATACGTTATAATTCAATGTGGTTTGAACATTCACAATTTAAACACCAAGAGTGTGTTGTGTGGAAAAGATGGGTTCCCCAGGACTGGTGCTATTaagtacacacatgcacacatattttatcatttattactcACTTGTGCCTGGGATGAGCTGATGTAAGGGAATCAGACAGTTCTGTGTGCTCATTGTGGAGTGAAAAACATGTCTTCAATAAAGTTTTTGTGACACTTTC

Function

symbol description
psmd8 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be part of proteasome regulatory particle, lid subcomplex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMD8 (proteasome 26S subunit, non-ATPase 8).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005838 proteasome regulatory particle cellular_component

KEGG:

id description
K03031 PSMD8, RPN12; 26S proteasome regulatory subunit N12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913320.2 True 1158 mRNA 0.44 7 19279150 19283703

Neighbor

gene id symbol gene type direction distance location
zgc:162879 NA coding upstream 39173 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 546336 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 1037541 18224061 ~ 18241609 (+)
reln reln coding upstream 1090666 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1676976 17581883 ~ 17602174 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 11789 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 70423 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 234900 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 274317 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 289600 19573303 ~ 19581510 (+)
G101813 NA non-coding upstream 7035 19271853 ~ 19272115 (+)
G101812 NA non-coding upstream 11605 19267319 ~ 19267545 (+)
G101808 NA non-coding upstream 25724 19252812 ~ 19253426 (+)
G101803 NA non-coding upstream 38388 19240116 ~ 19240762 (+)
G101603 NA non-coding upstream 153921 19124024 ~ 19125229 (+)
G101824 NA non-coding downstream 17551 19301254 ~ 19301961 (+)
G101855 NA non-coding downstream 51878 19335581 ~ 19335782 (+)
LOC117597536 NA non-coding downstream 52295 19335998 ~ 19339799 (+)
LOC117597585 NA non-coding downstream 79030 19362733 ~ 19386937 (+)
G101904 NA non-coding downstream 202698 19486401 ~ 19487282 (+)
G101602 NA other upstream 155273 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 156653 18957428 ~ 19122497 (+)
G101466 NA other upstream 484877 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 539152 18738343 ~ 18739998 (+)
G101419 NA other upstream 679775 18598714 ~ 18599375 (+)
cdon cdon other downstream 636346 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 720653 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 793262 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1355057 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1560971 20844674 ~ 20849338 (+)

Expression


Co-expression Network