pglyrp5 (LOC108264553)


Basic Information

Item Value
gene id pglyrp5
gene name LOC108264553
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20473179 ~ 20476270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913364.2
TACACTGCATGTCCTCAGAGCGGCAATTCCGCCCTGCGCCAAAGTCCATATGTGCTGAACTGCTgtagtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagtgtgtagcTGACTCTCTCACGCGGAAATTCCACAAGGAAATGCTGAAACATGTCCGCCCTCAGCAACTTGCTTTAACCTGCGGAGTGTTTATAAATTGCTCTCATTTTTCGtgtttagacacacacacacactgacacttaTAAACAgtgacacactgacactgacacacactttgacactgacacacacagtaacacacacagtgatacacacacagacatgacaGGAGCAGCTGAATACAGTACAGTGACGGTGATCCCTCGCAGTGTGTGGAAGGCAGTGGATGTTCAGATCAGAGAAAGATTACACAAACCTGCTGATAAGCTTATTATCCATCACACAGCAATGGGGAGCTGCTGGAATCGCACACAGAGCATCGCTCAGCTAATACATATTCAGCAAATACACATCCACGAGCGCAACTTCGCAGACATCGGCTACAACTTTTTGGTGGACCAGGCTGGTGTGATGTATGAAGGTCGTGGCTGGGGCATCGTAGGAGCACACGCGAAAACACATAACCATAGCTCTGTCGGTGTTGCTTTTATGGGCAACTTTAATGATGAGTCGCCGAGCGTGCAGGCTCTGTCAGCCGTGCGTGCTTTGATCCAGCACGGAGTGGCCAAGGGATATTTACAGCCCGACTTTGTGATTTTGGGACACAGAGACGTTGCAGACACGCAGTGTCCAGGAGAGAAGTTGTAttcctcactacacacactcaagaCACCAATAAACCACACATTCTGAAGGTTTCATTGTCTAAAACTAATGTTTAAATGACTCTTGCACTCTGCAGATACTGTATTTCATGAAATCCTTGTGTGCATTTCacttgttgtttattattaattttgtatagTTTGTCCTAACCTCCTATGTAAGCACCAAATCCAACAGATTCTGATTTAATGACCCATCATTAGATACTCTAAGAGAATGTTCTCATAACAGGGAAAGACAGGAAACACAAAAGTATGAAATTACTAAGAAATTAAGGCTTGTAAATCAATGTGATAATCACAAGCCTTCACCAGTTCCAGTTTTACAGTGCACTCCAGTGTTTAGATGCATTGCAAGAAAGAAGCACTTCCTGAcagcatctaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
peptidoglycan recognition protein 1-like isoform X2

GO: NA

KEGG:

id description
K24096 PGRP-SB; peptidoglycan recognition protein SB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913364.2 True 1233 mRNA 0.43 4 20473179 20476270

Neighbor

gene id symbol gene type direction distance location
foxg1c NA coding downstream 2090 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 8494 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 20032 20422273 ~ 20453147 (-)
ccnp NA coding downstream 83546 20382810 ~ 20389633 (-)
si:ch211-132b12.7 NA coding downstream 95847 20362330 ~ 20377332 (-)
polr2i polr2i,rpb9 coding upstream 4556 20480826 ~ 20484801 (-)
rasa2 rasa2,LOC108264552 coding upstream 13270 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 65373 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 90470 20566740 ~ 20572429 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 344536 20820806 ~ 20845204 (-)
G102444 NA non-coding downstream 434 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 113638 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 116582 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 182188 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 210039 20257332 ~ 20263140 (-)
G102449 NA non-coding upstream 2063 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 17987 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 102420 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 162601 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 519255 20995525 ~ 21003780 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 56605 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 492920 19980069 ~ 19980259 (-)
G101178 NA other downstream 2276373 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5115616 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6126171 14335936 ~ 14347008 (-)
G102566 NA other upstream 477332 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 519071 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1755178 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3114675 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3172414 23648684 ~ 23699707 (-)

Expression


Co-expression Network