snrpd2 (snrpd2,SNRPD2,LOC106612977,LOC106603799)


Basic Information

Item Value
gene id snrpd2
gene name snrpd2,SNRPD2,LOC106612977,LOC106603799
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20460343 ~ 20464685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913365.2
GGAGACTGACCCGGAAATAGTTTTATTTGAGGCGGTTTAGACCCGGAAGTGGCGCCATCACCAGCGACGTTCAGTCAGCGTGTTAGCAGACCTGCTACCTGTTTTATCTGTCAGAGTTGTAACAGAggataaaacaaaatGAGTCTTTTGAATAAGCCAAAGTCGGAGATGACCCCTGAGGAGCTGCAGAAGcgtgaggaggaggagtttaACACCGGGCCGCTGTCTGTCCTCACGCAGTCCGTCAAGAACAACACGCAGGTGCTGATCAACTGCCGCAACAACAAGAAGCTGCTGGGTCGAGTCAAAGCCTTCGACAGacACTGTaacatggtcctggagaacgtAAAGGAGATGTGGACTGAGGTGCCTAAGAGCGGAAAGGGAAAGAAGAAGTCCAAACCAGTGAATAAAGACCGTTACATCTCCAAGATGTTCCTGAGAGGAGACTCGGTCATCGTGGTGCTGAGGAATCCACTGATCACCGGCAAATAACTTGTATACTCTGAAGCGCGCACgttctcttcacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

symbol description
snrpd2 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide).

NR:

description
small nuclear ribonucleoprotein Sm D2

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0034709 methylosome cellular_component
GO:0034715 pICln-Sm protein complex cellular_component
GO:0034719 SMN-Sm protein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005687 U4 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K11096 SNRPD2, SMD2; small nuclear ribonucleoprotein D2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913365.2 True 581 mRNA 0.50 3 20460343 20464685

Neighbor

gene id symbol gene type direction distance location
vaspb vasp coding downstream 7196 20422273 ~ 20453147 (-)
ccnp NA coding downstream 70710 20382810 ~ 20389633 (-)
si:ch211-132b12.7 NA coding downstream 83011 20362330 ~ 20377332 (-)
nectin1b nectin1 coding downstream 168020 20215142 ~ 20292323 (-)
LOC113526513 cxcr5 coding downstream 405907 20051332 ~ 20054436 (-)
foxg1c NA coding upstream 5675 20470360 ~ 20471089 (-)
pglyrp5 LOC108264553 coding upstream 8494 20473179 ~ 20476270 (-)
polr2i polr2i,rpb9 coding upstream 16141 20480826 ~ 20484801 (-)
rasa2 rasa2,LOC108264552 coding upstream 24855 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 76958 20541643 ~ 20564081 (-)
G102434 NA non-coding downstream 100802 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 103746 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 169352 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 197203 20257332 ~ 20263140 (-)
G102225 NA non-coding downstream 366541 20092984 ~ 20093802 (-)
G102444 NA non-coding upstream 7186 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 13648 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 29572 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 114005 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 174186 20638871 ~ 20686185 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 43769 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 480084 19980069 ~ 19980259 (-)
G101178 NA other downstream 2263537 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5102780 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6113335 14335936 ~ 14347008 (-)
G102566 NA other upstream 488917 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 530656 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1766763 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3126260 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3183999 23648684 ~ 23699707 (-)

Expression


Co-expression Network