spred3 (spred3,LOC108264009,LOC107554984)


Basic Information

Item Value
gene id spred3
gene name spred3,LOC108264009,LOC107554984
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19295492 ~ 19308801 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913387.2
gcgaaagagcaagagagagcgagagtaagcgtgcgtgtgtgttctggtgagaagggaaataaaaaagacaggaGACCGGGGGCAGCCAGCTCGAAGCGGCAAGCAACACCGAGCCATGGAGGGCGACGTGCGTGTCCGAGCAGTGGTGATGACACGTGACGATTCTAGTGGCGGCTGGGTGCCCCTTGGAGGTGGAGGCCTCAGCCACGTTGTCATCTGTAAAGGGAGGAGTTCCGAAAGCCAAGGGCAGAAGGAGTATGTCATACGTGGAGAGCGGCTGCGCGATCgagcaCCCGTGCTCGAATGTGCCATTCAAAAGGGTCTGATCTACAACAAGGTGAACCCCATCTTCCATCACTGGCGTGTGGAGGAGAGAAAGTTTGGCCTGACCTTCCAGAGTCCAGCTGATGCCATTTCTTTTGAGAAGGGCCTTCAAATTGTCCTTGACAAGCTGGACAAAGGCTTTGACTCTCCTTCTTCCTCCACGCCAGAAGAAGGAGACACTGAAGATGATGGTCAAGCATCTCACACAGGCAGTGAGTCGTCCTCCAACAGCAGAAAGGAGATGTTGCCCAAGCCCATCACCATAGTGACTAGCGAGTCCTCCTCCACTTGCTTTGTCCGCTCTACAGCAGAGGAGTTTGGGTATGGGGAAGGGCATGCTGTCACTACTCAGACCCCTGCCCagGTCCATAGGCGGTCCTGCCAGCACCAGGTTTCTCAAGTATCAGCTGTGTTGAACCCTCCAGcccctcctccccctcctcctgcCCCCCCAACCTCCCCTCTGGCACCCCCAGCCTCCTCGCCCTTGTCCCCACTCTCCCCTACCATGTCCTTGCTGGAGGAAGGTGACCTACGCAGTATTGATCCATGCAAGGATTTATGGGGCTCACGGGGTTACGAGGACTACCGACGTGCAGGGGCCACACGGACCAAAGTTGGGGGTCTGACGGGAGGCGTCATGGTAGGAAGTGGGCCAGACAAGTCAGAGCTGTGTGTGGTGCACTTTGAGAAAGAACTGGCAGGTGTTGGCACTACAGGCTGTGAGGTCACTGTTATGCTGGACACCAAAGGCTCTCGGCGCCACTCCTCCTCACCCACCTGTATGCCTAATGCTATGTCTGGAGCATCTCCTGCAAGTGGCTCCCCACAGGAGACGGGCAAAAGCTCACCCTCGCCATGCTGCATCCATACTTCACTTGCCACACCCCGGTCTCGGACTCGCAAGAGAGGGGGCAGTGGGACCAGTGGGGGTGGAGATGCCATCTCACCCGATGATGACAGCCCATGTCCACAAGGCTCGTCCTCCTGCTCATCACGCTGTGTGTACTGTCGCTCGGTGTTTAGTGCCTCAGAGAATGGACGTGGCCGCTGCCGGGATGCTCCGGATCCAGCTCTACACTGCCTACGCCAGTGGACTTGTGTATGGTGTGCTGAGAGCCTGCTCTACCACTGCATGTCAGACTCTGAAGGCGAGTTCTGGGAGCCATGCTCGTGTGAAGACTCGCTGGGCCGTAGGCCACACCCACTCTGCTGTGCCGGCTGGATGGCACTGCTGGCACTGTCACTCTTTGTGCCCTGCATGTGCTGCTACCTGCCCCTGCGAGCATGCCTGCGATGTGGGGAGAGATGCGGCTGCTGCGGTGGAAAGCACAAGGCTGTGCGGTGAGACCTGGCTTTCAGGGGATCTGAGGCCAGGGAGAGGTTGTTGTGATGGCAGGAGAGGGAAGGGAGAACAccaaattttttcatttaaagaatAGCTGTAGAGCAAGATCTCAAACTATCATTAAAAAGTCCCTTTCCCCCCACAATCCTCTGCTGCATTCCGTTTGTACTCTACCAGGACCCTTAATGGTGGTGCCAACACACAATGCCCTGACAGCTTTGCATTGTGCTCTTCAGAGAGACACGAAGATGCAGGAAGATGGCTCCCACCGCCAGCTTCTCTCAGCTCCGACTGACTGTTGTTAAGGCTCCCAGAAGGTGGATGCTGAAAACACCAATGTGTAAAGCTAGGTTaggtttttttggttgtttttttaggAAGAcaatacaaaattacaaaatgtataatataccTTACTTTCCTTGACATTGAgaggtttttgttttatatataatttattaacatGCTCCCTTTTTACCGAGTTTTGCCTCAATGTTCCAGACAGGttagagagatagaaaaaaaatctatagagagaaaaagcagacaAAATTACATGCATTGGCATACAGAGGCATATTGAGTGGTCAGTGTGTCTTTGGAGCAGTTTCAGAAAAGGACAAGAGAACACTGTTCAGGAAAAATTTGGATTTGATGTTACCAAGCATGGAAGGTTGCTTATGGGTAAGATCACTAAAATTGCAATTTACATACATGTACTCTTTTCAGAAAAGAAAGTGGTATAGTATTTCACTGTCAGAAACCAAACCTATTTtgaaactgcaaaaaaagaataacataACAATATTATAGATATCATCATTGGCCTTGATGTGCAGATTACAAATtcaatgtaattaataatataatgaaaaattatatttttattaggaCTCTATTGATAAGGATAACTGGGGCCAGGGAAAATACAGGCCTGTCAAAGAGAACAGGAAATGTAattgaaaaaagtgaaagtgaaaacgGGTTATGGTGTAGAATCAAACACTCCAATCTGTTCAGTCTGCTGAGTAATAAGTCTGTATCTGCATATGAAGAAACAATcactcatttgtttaatttattggtGTATACAGAATCCCATAGGAGTTTGACCACTTTTAGTGTCATTCTGTACAATCTTGCTAATTTGTCACTGTAATCAATTGCAAAGTGACCTTTTTAGAAAACtagtaatatataatttaagCTGAATATCAGTCCTGTTAAACCAAAACACTTTTGCAGTGATTGTTCCAGCATGATCTTAcattatattcaaatataaatgtctgttattttatacaaaattttaccattgaaaatataaatgtattagtATGAACCTCGGTCTTTTTGCAACTGAATACAATGTACAAAACTGCTAGTCACAGTAAAgaatttagacaaatcagatcAAACACTGCCTGTGATCACAGACTGAACCTCACAGCTTATACTATATATCTGATGGGACATGGCTTTAAAATATTTGTCTACAAGCTGCTATTTTAACcc
>XM_026913388.2
GTCATCTGTAAAGGGAGGAGTTCCGAAAGCCAAGGGCAGAAGGAGTATGTCATACGTGGAGAGCGGCTGCGCGATCgagcagtgagtgtCCCGTGCTCGAATGTGCCATTCAAAAGGGTCTGATCTACAACAAGGTGAACCCCATCTTCCATCACTGGCGTGTGGAGGAGAGAAAGTTTGGCCTGACCTTCCAGAGTCCAGCTGATGCCATTTCTTTTGAGAAGGGCCTTCAAATTGTCCTTGACAAGCTGGACAAAGGCTTTGACTCTCCTTCTTCCTCCACGCCAGAAGAAGGAGACACTGAAGATGATGGTCAAGCATCTGTATCAGTCTCACACAGGCAGTGAGTCGTCCTCCAACAGCAGAAAGGAGATGTTGCCCAAGCCCATCACCATAGTGACTAGCGAGTCCTCCTCCACTTGCTTTGTCCGCTCTACAGCAGAGGAGTTTGGGTATGGGGAAGGGCATGCTGTCACTACTCAGACCCCTGCCCagGTCCATAGGCGGTCCTGCCAGCACCAGGTTTCTCAAGTATCAGCTGTGTTGAACCCTCCAGcccctcctccccctcctcctgcCCCCCCAACCTCCCCTCTGGCACCCCCAGCCTCCTCGCCCTTGTCCCCACTCTCCCCTACCATGTCCTTGCTGGAGGAAGGTGACCTACGCAGTATTGATCCATGCAAGGATTTATGGGGCTCACGGGGTTACGAGGACTACCGACGTGCAGGGGCCACACGGACCAAAGTTGGGGGTCTGACGGGAGGCGTCATGGTAGGAAGTGGGCCAGACAAGTCAGAGCTGTGTGTGGTGCACTTTGAGAAAGAACTGGCAGGTGTTGGCACTACAGGCTGTGAGGTCACTGTTATGCTGGACACCAAAGGCTCTCGGCGCCACTCCTCCTCACCCACCTGTATGCCTAATGCTATGTCTGGAGCATCTCCTGCAAGTGGCTCCCCACAGGAGACGGGCAAAAGCTCACCCTCGCCATGCTGCATCCATACTTCACTTGCCACACCCCGGTCTCGGACTCGCAAGAGAGGGGGCAGTGGGACCAGTGGGGGTGGAGATGCCATCTCACCCGATGATGACAGCCCATGTCCACAAGGCTCGTCCTCCTGCTCATCACGCTGTGTGTACTGTCGCTCGGTGTTTAGTGCCTCAGAGAATGGACGTGGCCGCTGCCGGGATGCTCCGGATCCAGCTCTACACTGCCTACGCCAGTGGACTTGTGTATGGTGTGCTGAGAGCCTGCTCTACCACTGCATGTCAGACTCTGAAGGCGAGTTCTGGGAGCCATGCTCGTGTGAAGACTCGCTGGGCCGTAGGCCACACCCACTCTGCTGTGCCGGCTGGATGGCACTGCTGGCACTGTCACTCTTTGTGCCCTGCATGTGCTGCTACCTGCCCCTGCGAGCATGCCTGCGATGTGGGGAGAGATGCGGCTGCTGCGGTGGAAAGCACAAGGCTGTGCGGTGAGACCTGGCTTTCAGGGGATCTGAGGCCAGGGAGAGGTTGTTGTGATGGCAGGAGAGGGAAGGGAGAACAccaaattttttcatttaaagaatAGCTGTAGAGCAAGATCTCAAACTATCATTAAAAAGTCCCTTTCCCCCCACAATCCTCTGCTGCATTCCGTTTGTACTCTACCAGGACCCTTAATGGTGGTGCCAACACACAATGCCCTGACAGCTTTGCATTGTGCTCTTCAGAGAGACACGAAGATGCAGGAAGATGGCTCCCACCGCCAGCTTCTCTCAGCTCCGACTGACTGTTGTTAAGGCTCCCAGAAGGTGGATGCTGAAAACACCAATGTGTAAAGCTAGGTTaggtttttttggttgtttttttaggAAGAcaatacaaaattacaaaatgtataatataccTTACTTTCCTTGACATTGAgaggtttttgttttatatataatttattaacatGCTCCCTTTTTACCGAGTTTTGCCTCAATGTTCCAGACAGGttagagagatagaaaaaaaatctatagagagaaaaagcagacaAAATTACATGCATTGGCATACAGAGGCATATTGAGTGGTCAGTGTGTCTTTGGAGCAGTTTCAGAAAAGGACAAGAGAACACTGTTCAGGAAAAATTTGGATTTGATGTTACCAAGCATGGAAGGTTGCTTATGGGTAAGATCACTAAAATTGCAATTTACATACATGTACTCTTTTCAGAAAAGAAAGTGGTATAGTATTTCACTGTCAGAAACCAAACCTATTTtgaaactgcaaaaaaagaataacataACAATATTATAGATATCATCATTGGCCTTGATGTGCAGATTACAAATtcaatgtaattaataatataatgaaaaattatatttttattaggaCTCTATTGATAAGGATAACTGGGGCCAGGGAAAATACAGGCCTGTCAAAGAGAACAGGAAATGTAattgaaaaaagtgaaagtgaaaacgGGTTATGGTGTAGAATCAAACACTCCAATCTGTTCAGTCTGCTGAGTAATAAGTCTGTATCTGCATATGAAGAAACAATcactcatttgtttaatttattggtGTATACAGAATCCCATAGGAGTTTGACCACTTTTAGTGTCATTCTGTACAATCTTGCTAATTTGTCACTGTAATCAATTGCAAAGTGACCTTTTTAGAAAACtagtaatatataatttaagCTGAATATCAGTCCTGTTAAACCAAAACACTTTTGCAGTGATTGTTCCAGCATGATCTTAcattatattcaaatataaatgtctgttattttatacaaaattttaccattgaaaatataaatgtattagtATGAACCTCGGTCTTTTTGCAACTGAATACAATGTACAAAACTGCTAGTCACAGTAAAgaatttagacaaatcagatcAAACACTGCCTGTGATCACAGACTGAACCTCACAGCTTATACTATATATCTGATGGGACATGGCTTTAAAATATTTGTCTACAAGCTGCTATTTTAACcc

Function

symbol description
spred3 Predicted to enable protein kinase binding activity. Predicted to be involved in negative regulation of peptidyl-threonine phosphorylation; positive regulation of DNA damage response, signal transduction by p53 class mediator; and regulation of protein deacetylation. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in membrane. Orthologous to human SPRED3 (sprouty related EVH1 domain containing 3).

NR:

description
sprouty-related, EVH1 domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913387.2 True 3187 mRNA 0.47 6 19295492 19308801
XM_026913388.2 False 2994 mRNA 0.46 5 19297565 19308801

Neighbor

gene id symbol gene type direction distance location
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding upstream 11789 19279150 ~ 19283703 (+)
zgc:162879 NA coding upstream 55515 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 562678 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 1053883 18224061 ~ 18241609 (+)
reln reln coding upstream 1107008 17761517 ~ 18188484 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 45325 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 209802 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 249219 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 264502 19573303 ~ 19581510 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding downstream 280726 19589527 ~ 19609798 (+)
G101813 NA non-coding upstream 23377 19271853 ~ 19272115 (+)
G101812 NA non-coding upstream 27947 19267319 ~ 19267545 (+)
G101808 NA non-coding upstream 42066 19252812 ~ 19253426 (+)
G101803 NA non-coding upstream 54730 19240116 ~ 19240762 (+)
G101603 NA non-coding upstream 170263 19124024 ~ 19125229 (+)
G101855 NA non-coding downstream 26780 19335581 ~ 19335782 (+)
LOC117597536 NA non-coding downstream 27197 19335998 ~ 19339799 (+)
LOC117597585 NA non-coding downstream 53932 19362733 ~ 19386937 (+)
G101904 NA non-coding downstream 177600 19486401 ~ 19487282 (+)
G101919 NA non-coding downstream 276384 19585185 ~ 19585435 (+)
G101602 NA other upstream 171615 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 172995 18957428 ~ 19122497 (+)
G101466 NA other upstream 501219 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 555494 18738343 ~ 18739998 (+)
G101419 NA other upstream 696117 18598714 ~ 18599375 (+)
cdon cdon other downstream 611248 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 695555 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 768164 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1329959 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1535873 20844674 ~ 20849338 (+)

Expression


Co-expression Network