dhdh.2 (dhdh,LOC108431994)


Basic Information

Item Value
gene id dhdh.2
gene name dhdh,LOC108431994
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26821167 ~ 26827022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913392.2
tgtgtgtgtcagactgtgtgtgtgtgtcagagtgtgtgttagcgtgtgtgtgagtcGCCATCATGGTGGTCAGGTGGGGAATCTGCAGCGCTGGGAAGATCAGCCACGACTTCACAGTGGCGTTGAAGACTCTTCCTCCTGAAGATCACCAGGTGGTTGCTGTTGCAGCACGTAACGCAAAGCGAGCAGAAGAGTTTGCCCAGAAACACTGCATCCCTAAAGTATACAGCAGCTATGAGGAACTGGCCAAAGATCCCGAGATAGATGTGGTATACGTGGGCACCATCCATCCCCATCATCACTCAGCAGGCCTCATCTTCCTCAATGCTAAGAAGAACGTTCTGTGTGAGAAACCTCTAGCCATGAATCTGAGAGAGGTGAAGGAGCTGGTGGCCACAGCGAAGACGAATAACGTCTTCTTGATGGAAGGTGTGTGGACGCGCTTCTTTCCTGTCTCTTTGGAGATCTCCAGGTTGCTGGTGCAGGAAGCGGTAGGAGAGGTGAAGCTGGTGAGAGTGGACTTCGGGGCATCCCTGAAGAACATCCCTCGCTCTGTGGAGAAGGAGCTGGGAGGAGGTGCGATGCTTGATATCGGAATCTACTGCCTGCAGTTTGTACTCATGGTGTACGATGGTGAGAAACCTGAGAGCGTCCACGCTACCGGAGTCTGCCTGGACACAGGAGTGGACGAGAGCATGGTGGTCACACTGAAGTTCTCTCGAGGAAGATTAGCAGTGTGCACGTACACAATAGCCATGAACCTTCCAAACGAAGCCGTTATCCTCGGGACTAAAGGAACTATCAGGGTCCCTGCTCCTATGTGGTCTCCCACATCACTGATTGTAAATGAGAAAGAGACTCACTACCCAGTACCTGAACCGTACCTGCCTCTCAACTTCATAAACAGCACTGGTATGAGATACGAGGCTGAGGAAGTGAGACAGTGTCTCCTCAAAGGACTGAAGGAGAGTTCCCGGATGTCACACTCGGACTCGACTCTGCTGGCTGAGATAATGGATGAATGCAGGAGGCAAGTCGGAGTGGTGTACAGCCAAGACCACCAGTAAGCTTCAAACTCTTAGCATTCTGGTGGTGTCCCCAGTAGGGATTTTATATAAATTGATTCCTTACTTAAAAACACTTGGGATgttgttctaggaaaataagcCATGGGGTGGTCTGATGGAGCCCGACACAGAGCTATGATTTTCACAACTATATGTAGTTTAAAATGTCAGGATGTGAAGGTTTtttccaggctgccacacataatacagtatacagtcCAGTGTCACATGCTGTATTTCAATACTagactgtaaatgtgtttaaatattaagtatataaataaagtgtgatAAGAACAGA

Function

symbol description
dhdh Predicted to enable D-xylose 1-dehydrogenase (NADP+) activity. Predicted to be involved in D-xylose catabolic process.

NR:

description
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047837 D-xylose 1-dehydrogenase (NADP+) activity molecular_function

KEGG:

id description
K00078 DHDH; dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913392.2 True 1368 mRNA 0.49 7 26821167 26827022

Neighbor

gene id symbol gene type direction distance location
hcn4 hcn4,LOC108263998,LOC102793391 coding upstream 31912 26694883 ~ 26789255 (+)
nptnb nptn,LOC108431650,LOC107715830 coding upstream 139742 26648551 ~ 26681425 (+)
LOC113526591 NA coding upstream 176338 26636409 ~ 26644829 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding upstream 186670 26622446 ~ 26634497 (+)
LOC113526907 LOC108264702 coding upstream 199025 26614822 ~ 26622142 (+)
LOC113526325 parp6 coding downstream 23940 26850962 ~ 26875332 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding downstream 86306 26913328 ~ 27063061 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding downstream 278444 27105466 ~ 27107571 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding downstream 293163 27120185 ~ 27128413 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 731418 27558440 ~ 27600569 (+)
G105548 NA non-coding upstream 122989 26697978 ~ 26698178 (+)
G105490 NA non-coding upstream 129490 26691434 ~ 26691677 (+)
G105479 LOC108264702 non-coding upstream 209907 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 289079 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 293360 26525920 ~ 26527807 (+)
G105733 NA non-coding downstream 236333 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 237669 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 302326 27129348 ~ 27129629 (+)
G105855 NA non-coding downstream 314823 27141845 ~ 27145031 (+)
G105904 NA non-coding downstream 402762 27229784 ~ 27234224 (+)
G104781 NA other upstream 1505954 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1580954 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3058122 23739502 ~ 23763045 (+)
G103830 NA other upstream 3191444 23615103 ~ 23629723 (+)
serp1 NA other upstream 3245454 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 3956 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 384367 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 699101 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1117768 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1239860 28066882 ~ 28070685 (+)

Expression


Co-expression Network