si:ch211-14c7.2 (LOC108264030)


Basic Information

Item Value
gene id si:ch211-14c7.2
gene name LOC108264030
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20971589 ~ 20985096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913403.2
TATAGACAGACGCTATAGAGACTGAGTGGCTCTTACTACAGAGACCTGATGGTGGTGTGACAGTGTCGCCTGATCAGGACGCGATTATACACGCTTATACTCTTGGATATGTGCCTTTTAAAATGTGATCGATTAAATACTGGGACGTGTCGAATAATCAGATGTAGATTAGATTAGACAGAGTCGACGTGCCTCCTTCGCGCGCGGCCATCTGAATCATCACAGGGATTCGTGACACGGATTCTGCTGgacgaataaaaaaaatggccagAGCATCAAGCACTTAACCAACCTCTCAGAACAATAAAAACCAGAATGCTACagcacaacaacaataataactaCCCTTGCCTGGACGTGGCCCATAGAGAGCTGCTCCATGGTTGCAGGCGAAATGGTACTACGTTCAGTAGTGCCCTTGGATTCGGCGCAATCCCGCTAATTAAAGGTCTTAGGGCTTGGGCAGTAAGTGGAGGATATTCGAGAAGTAAGAGAAAAGCTGCAGCTGCTTGTCAAGCATCTGACACAGCTCATGAGAGCAGAATTGGAACCAGCCATAGGAAGACACATTCATGTCATACACCTGGGGTCAGGCAAGGAGGACTTGGTGCTCTAGTGACTGTGGCCACATTGAAGGACTCAGATGGAGGCAGGCAAACCCAGACTCGATGCCTCTTTCTCAAAGCTGAAGGATGTAATTACCTCTGTGCTGTGGGGACCAGAGTGGATGGAAGAAAATCTGGAAAAGGGAGTCAGGATGGTGTGGGAATTTGTGATGGAAAACCTGTCAGAAAGTGGAGAAAGTCTAGCAAGAGACCTAAATCCATGGAGAACATCTCAGTAGCTGAGAATAAAAAGGGAGTTGCCTCTACAAAACTGGAACTTTTGGACAAATGTTCCATAACACAGTGCCTAAAGGCAAAAAGTGCCCTGACAGCGATTAACAATGAAGAAGATCATCTAAATAGGTCACAATTTTCCGCTCTACATGAGATGTGTGAACCAGCCACATGCAGCCCTTCTACCAAATATGATTCTAGTACAGAAGTGAAGGAAGACACAACACTAGCCTCTTGCCCCGAACTAAATGATTGTGAGGTTTTTGTTAGACAAGACACACCTATTTCTACAAGTGACTACACAGATAAGACCACACAAATCAGTAAACACGAGAATGATCTTACAGCTGATGTGAATCTGAATCATGTTTTAAAATCCAAGGAAATTGGTATGCCAAACTCTGAAGAGCATAGTCCAGAATTTGGAGTGGATATACATAACAAAAATGGAATCTTATCCACCAATAGCCATAGCCACTATAACACCACAGACACCATTAAATATGAGATTGACATTTTAGCAGATAGACATCTGAGTAAATCCAATGAATTTGGTGTGGAGAAATCTAAACAGCATGGTCTAGAGTCTGAAGTACTTTCAGAGGACACCAGTAAGACAAATGGAACTTTGTTAACCATTAGTCATAGCCACTGTGAGGAGACTATCATACCCCCTGCATCCAGCAACCATTCAGATGATActttattaacaattatacaAGTGGAACAGGAGATAAAGAAGAAAATAGATGACAGTTCCTTTAACCATGACATGGAGGAGATTGTCCATTTTGGTGAAATGAAGAAAGACACGGCTAGTGCCTCTAATCAGGACATCAATCATGTGAGTGAACCAGCAGAGGAGCATTGGGGGTCACCTGCATGTTCTTCTCATCATAAGCAGCAAATAATCATGGAAGTAAATGTGACATTTGaggatggaaaaaaattaaacaccacAAATGAGGCTTTTGAAGAGCTTGCTAATTCTTTATCACAAGGTTCTGGCTCTTTCAATGTTGCTAATGCTATTACATCCCTGCCTAATCCGGCCCCCACCACAAACAGAACTGCCCTCAGATCCATAAGTAGGCAGCAACAGGAGGAGACCAAGGGTAGGAGATTAGTACTAAAACCAGCATTGGAGCTGCTAGAAAAGCAGGAGAGAGGCCAGGAAGCGGACAAAGTGGCGGACGAAGGGCCTGAAGTGGTGGATGAGGAAGATGGAGATGAGTTTGGAGTCTTTATGAAGGCAGGAGATGAGCAGGTCTGGAATGAAGGATTCCACGAGCTCAAAAAAGTGCCTTGTGAGAAGTTTGCTGGCATTGacactggaaactcctctGTTTCAAATGAACCCCCATCCTGGATGTCTGATTGGACCAGAGACCTGTCAATCAAGCAATCAGAGGACACATGGACTGCCTTCAAGCAGGAAGTGGTCAGCAGAGGAACAGAGAAGGAGTCCTGGTTTTCGACTGCTGTGGAAAACAtgcacctcacacactcatctctcaTTACTGTGcCAAATGTGTTTTTAGAAGCCTTTCCCTATCTAAAATCCTCCTGTGGAGATTCTGACTGCATTCCCACATTGGCAGAGCTGCTGCGAGGTTCTGCAGCAGAAAACAGACCTGAAAAAAATGGGAGGCAGAGTCTACTAGATGGCCTTCAGGATCTGGACCGCATGATTGGTGTGAAATACAAGGTGGCAGAGTCTCTGTCCCGAAAGCTTCTCCTGCAGTCATTGGAGTTGAGGACCCTGAAACCTGAGCGTGCAGGTGGCCATAAACACAACATGGCAAGGTTTTCACCAAACCTTCCAATGTCCAACCAGCAGTTAGCGGCTAACGCTAAAAGAAGACTCTCTTATGACATCAACAGAAACATCATGTCATAGTTTCCAATTTTAAATCACTCTATTCttcaacagctggagaaagaatAACTTCAGATGAAAACAAGCAGAATTGTTCCCTTCCCTCTGCAGTCACATGGGAGATTAGTTGTTGTATATTTATGTCTGTTAGTATTTTAGTATGTCCATTTCCCCAACAAcctatttaaaaatgaaaagttatCACATGCATCCTGATGTTGCTAAAAGACAGACATTCCTGGGTCAACAAGGATCAGCTTGATCATATGACATCACCACATTTACCTAACACTAACTAACTATATAATGAACTTTGCTACTGGTTTTGATTACACAATAAAAGCATTTAcctaatgttagcttgctagtaCTTAACATCAGATATCTAATGCTGGAGAGGGAACATTGATATTAGTTAAGCCATCTAGTTAGCTGGTTAACTTATCGAATGTTACCAGactattatattatttctttcatttattcatcatctATATCCTGTGTTGTGGTGGATTTGGAGcctatcctgagaacactgggcGCTAGGTAggagtccatcacaggacacatagcacacacattcaaacattcACTCACACCTATGGGTAATTTACCGtatccaatccacctaccagcatgtttttgggaggtcggaggaaaccggagaagaaaaggaaaatcatGCGGACAGAGGGAGAacacaggaagaacagaaactcctcacacaaacacactattgttacacaaacagtaacaaatGCTGTATTATGTACTTACATTATGCCTGGACAATTAAAAGCACAGGCTAGGGATAATTTCACATGATTTAATGATTTCACATGATGCAATAACCTAGTGACATTCAAATTTCTCCCTTATTGACCCAGGGATCAGTTGCTCATTTTACAGATACTTTTATCTGAAGTAATTTACAAGCATAGGTatagaagaagaacaagaggaacaataacaacaacaagaaaaataattaaaggtcTTTTTAAGGGCTTAATAGCAGCACGCTGAACTTAGATTTCAAGTCACCAATAAGGTAACTTATTGTCCCCTGTGTGGACAATAAGAACATTTGgacattaaaattatatttactaGTCCTGTGCCAAAACTCGATCCATACTGTtacactttacattttcttctttgTAATGGAAGTTCCAATAATGCACTTATTGTTCTGGTTCTTGTCTATCTAATTACACTTGTTTCAGAATAAATATTTGTTGTCCAATCTATCATCCTATCTCACTGTTAAGtgaaatgaatgatgaatattTGGGATTTTTTCAGACCATTAAAATcaaactgcttttattttatttttcatttgaatcaGAAAACTGCAGTGTGCCATTTTTACCAAATGTGAAATTCTGAAGAATAAAGACTGTATTTTCTCAGTTTGAAGATCATGTACTCCTGTCAACATGTcgattgataataataataataaaatggaatCAGTGGATTTGA

Function

NR:

description
PREDICTED: ABC transporter F family member 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913403.2 True 4209 mRNA 0.41 6 20971589 20985096

Neighbor

gene id symbol gene type direction distance location
pld3 pld3 coding upstream 47300 20906063 ~ 20924289 (+)
foxa3 foxa3 coding upstream 107395 20860782 ~ 20864194 (+)
sphkap sphkap coding upstream 152261 20773604 ~ 20819328 (+)
dner dner coding upstream 313673 20635028 ~ 20657916 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 340985 20573281 ~ 20630604 (+)
kcnk6 LOC108264595 coding downstream 5888 20990984 ~ 21003744 (+)
shkbp1 shkbp1,LOC107692479,LOC107656962,LOC107724139 coding downstream 123817 21108913 ~ 21124986 (+)
LOC113526806 LOC108264295 coding downstream 269968 21255064 ~ 21311506 (+)
LOC113526557 zgc:86725,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding downstream 333089 21318185 ~ 21325267 (+)
LOC113526575 LOC108264858,LOC108440598 coding downstream 355300 21340396 ~ 21463432 (+)
G102415 NA non-coding upstream 37495 20930187 ~ 20934094 (+)
G102374 NA non-coding upstream 363995 20606602 ~ 20607594 (+)
G102370 NA non-coding upstream 389644 20578618 ~ 20581945 (+)
G102327 NA non-coding upstream 495418 20475804 ~ 20476171 (+)
G102325 NA non-coding upstream 497852 20473342 ~ 20473737 (+)
G102585 NA non-coding downstream 19240 21004336 ~ 21004721 (+)
G102703 NA non-coding downstream 163988 21149084 ~ 21194404 (+)
G102903 NA non-coding downstream 519648 21504744 ~ 21505622 (+)
G103130 NA non-coding downstream 1064078 22049174 ~ 22049382 (+)
G103140 NA non-coding downstream 1143273 22128369 ~ 22170834 (+)
prx NA other upstream 4318 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 122251 20844674 ~ 20849338 (+)
pid1 pid1 other upstream 285401 20638760 ~ 20686188 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 878657 20076965 ~ 20092932 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 918447 20004356 ~ 20053142 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 40931 21026027 ~ 21102216 (+)
zbbx zbbx other downstream 777351 21762447 ~ 21813210 (+)
LOC113526422 p2ry6 other downstream 1957613 22942709 ~ 22983599 (+)
relt relt other downstream 2127988 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 2178550 23163646 ~ 23259257 (+)

Expression


Co-expression Network