b3gat1a (b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230)


Basic Information

Item Value
gene id b3gat1a
gene name b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24991782 ~ 25011741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913405.2
aTTCTGTTCTCTGCTGTATAAGATGACCTGGGTGGTAATGGCCCGGTGCAAGATCTCTAACAAGCAGCTTTTGCAGCTGCACGTCCAACACACATCTGTCCATCGCTTATAACCACGGGTAATGACCAGGCACAGAATCAACCCTGGAGATGCCGAAGAGAAGAGACATTCTTGCCATCGTGTTAATCGTGTTACCTTGGACTCTGCTCATCACTGTGTGGCACCAGAGCGCCATCGCCCCCCTGCTCGCTATCCGAAAGGATGATGGAGCTGGTGAAGGCAGACGTGACACAGGAAGCCAAACGAGCGACTCAAAGGAGTTCTGCTCCTCTGATAAGGACATAGTGGAGGTGGTGCGCACCGAGTACGTGTACACACGGCCGCCTCCATGGTCTGATGCCCTGCCTACCATCCACGTTATCACACCAACCTACAGCCGGCCAGTGCAGAAAGCTGAGCTAACTAGGTTGGCCAACACCTTCCTGCACGTCCCCAACCTGCACTGGATCCTGGTGGAGGATGCGCAGAGGAGGACCCCACTGGTCACGCGTCTGCTGAGGGAGACGGGCCTCAACTACACGCATCTGAACGTAGAGACGCCTCGTAACTACAAGCTGCGAGGGGATGCACGGGATCCCAGGATCCCACGGGGAACCATGCAGAGGAATCTGGCTCTCCGGTGGCTACGGGAGACCTTCAGCCCCAACAGCACTCAGTCAGGCATAGTCTACTTCGCTGATGATGATAACACCTACAGTCTGGAACTCTTTGAAGAGatGCGCTCCACGCGTAAGGTGTCCGTTTGGCCCGTAGCTTTTGTCGGAGGTTTGCGCTATGAGTCCCCCAAGGTCAACGCCGCTGGCAAAGTGTACGGATGGAAAACGGTGTTTGATCCTCACCGGCCTTTTGCTATTGATATGGCGGGATTTGCCATCAACTTGCGGCTCATCCTGTTCAAACCACAAGCCTATTTCAAACTGCGGGGGGTCAAGGGGGGCTACCAGGAGAGCAGCCTGCTCCGAGAACTCGTCACTCTCAATGACCTGGAACCGAAAGCTGCTAATTGCACTAAGATTCTCGTGTGGCACACAAGGACAGAAAAACCTGTCCTGGTGAACGAAGGCAAGAAAGGCTTCACAGATCCAAATGTGGAAATCTGACATCCTCTACAACACTGgcaCTTGGATAATTCAAGGCCCTACAGGAACAAAGAGGCAGCATCTCAGAACCTAACCTTCAGACATGATTTCTTGTTCCTGCTAACTACAGTGAAAATAACTGACTACCACAATTGTATCTTTTAAAGCACAGATTGGTTCAACAAGGCAATATCTCTCGGTATTTTGTATGTAAAGCTGTTCGTGATTGTAACAAAGACAGGAAGTGAAACAGCGGAACATCGACGCATCTGTtctcaagacacacacacacacacacacacacacacacaaaaagaagaGATGCGAGGTCCCTGACTCTTCCCAGCACAGGAGTGTAGTAACGAAAAAGACGCACTGGACTGGCGCATACCTGCTGAACGAGGGAGGACGAATCATTTCAATTTGGTtgatctttaaataaataaactcacagACAGAACTCTTTTCAGAGATTAACACCTACatagaagagtttttttttaacttaacacAGTGTCTTCTTTTCATTTAATGTCCTTTTGTCCATTGTGTTCACTCACTTGCTAGTTCAGAAAAACTGACTTGTTCTCTGCTTGACTAAAATACAGGTTCTCAAAGTGTT
>XM_034305013.1
aTTCTGTTCTCTGCTGTATAAGATGACCTGGGTGGTAATGGCCCGGTGCAAGATCTCTAACAAGCAGCTTTTGCAGCTGCACGTCCAACACACATCTGTCCATCGCTTATAACCACGGGTAATGACCAGGCACAGAATCAACCCTGGAGATGCCGAAGAGAAGAGACATTCTTGCCATCGTGTTAATCGTGTTACCTTGGACTCTGCTCATCACTGTGTGGCACCAGAGCGCCATCGCCCCCCTGCTCGCTATCCGAAAGGCTTGTCACCATCTAGTTAAAGAGATCTTTATCATACCCGAGCGGCTAATGATCCAACGGCACCGCCTGTCAGATGATGGAGCTGGTGAAGGCAGACGTGACACAGGAAGCCAAACGAGCGACTCAAAGGAGTTCTGCTCCTCTGATAAGGACATAGTGGAGGTGGTGCGCACCGAGTACGTGTACACACGGCCGCCTCCATGGTCTGATGCCCTGCCTACCATCCACGTTATCACACCAACCTACAGCCGGCCAGTGCAGAAAGCTGAGCTAACTAGGTTGGCCAACACCTTCCTGCACGTCCCCAACCTGCACTGGATCCTGGTGGAGGATGCGCAGAGGAGGACCCCACTGGTCACGCGTCTGCTGAGGGAGACGGGCCTCAACTACACGCATCTGAACGTAGAGACGCCTCGTAACTACAAGCTGCGAGGGGATGCACGGGATCCCAGGATCCCACGGGGAACCATGCAGAGGAATCTGGCTCTCCGGTGGCTACGGGAGACCTTCAGCCCCAACAGCACTCAGTCAGGCATAGTCTACTTCGCTGATGATGATAACACCTACAGTCTGGAACTCTTTGAAGAGatGCGCTCCACGCGTAAGGTGTCCGTTTGGCCCGTAGCTTTTGTCGGAGGTTTGCGCTATGAGTCCCCCAAGGTCAACGCCGCTGGCAAAGTGTACGGATGGAAAACGGTGTTTGATCCTCACCGGCCTTTTGCTATTGATATGGCGGGATTTGCCATCAACTTGCGGCTCATCCTGTTCAAACCACAAGCCTATTTCAAACTGCGGGGGGTCAAGGGGGGCTACCAGGAGAGCAGCCTGCTCCGAGAACTCGTCACTCTCAATGACCTGGAACCGAAAGCTGCTAATTGCACTAAGATTCTCGTGTGGCACACAAGGACAGAAAAACCTGTCCTGGTGAACGAAGGCAAGAAAGGCTTCACAGATCCAAATGTGGAAATCTGACATCCTCTACAACACTGgcaCTTGGATAATTCAAGGCCCTACAGGAACAAAGAGGCAGCATCTCAGAACCTAACCTTCAGACATGATTTCTTGTTCCTGCTAACTACAGTGAAAATAACTGACTACCACAATTGTATCTTTTAAAGCACAGATTGGTTCAACAAGGCAATATCTCTCGGTATTTTGTATGTAAAGCTGTTCGTGATTGTAACAAAGACAGGAAGTGAAACAGCGGAACATCGACGCATCTGTtctcaagacacacacacacacacacacacacacacacaaaaagaagaGATGCGAGGTCCCTGACTCTTCCCAGCACAGGAGTGTAGTAACGAAAAAGACGCACTGGACTGGCGCATACCTGCTGAACGAGGGAGGACGAATCATTTCAATTTGGTtgatctttaaataaataaactcacagACAGAACTCTTTTCAGAGATTAACACCTACatagaagagtttttttttaacttaacacAGTGTCTTCTTTTCATTTAATGTCCTTTTGTCCATTGTGTTCACTCACTTGCTAGTTCAGAAAAACTGACTTGTTCTCTGCTTGACTAAAATACAGGTTCTCAAAGTGTT

Function

symbol description
b3gat1 Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be involved in carbohydrate metabolic process and chondroitin sulfate proteoglycan biosynthetic process. Located in intracellular membrane-bounded organelle.

NR:

description
PREDICTED: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG:

id description
K00735 B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913405.2 False 1761 mRNA 0.49 6 24991782 25011741
XM_034305013.1 True 1833 mRNA 0.49 7 24991782 25011741

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 364753 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 524306 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 530079 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 564654 24392298 ~ 24427128 (+)
cep126 NA coding upstream 607336 24368079 ~ 24384446 (+)
exosc5 exosc5 coding downstream 23772 25035513 ~ 25040089 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 125273 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 128411 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 238601 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 257152 25268893 ~ 25282220 (+)
G104523 NA non-coding upstream 55903 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 164635 24826766 ~ 24827147 (+)
G104429 NA non-coding upstream 227670 24762642 ~ 24764112 (+)
G104325 NA non-coding upstream 357377 24575492 ~ 24634405 (+)
G104284 NA non-coding upstream 419895 24564632 ~ 24571887 (+)
G104520 NA non-coding downstream 175 25011916 ~ 25012779 (+)
G104522 NA non-coding downstream 1371 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding downstream 46134 25057875 ~ 25061300 (+)
G104739 NA non-coding downstream 231059 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 231740 25243481 ~ 25243878 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1228737 23739502 ~ 23763045 (+)
G103830 NA other upstream 1362059 23615103 ~ 23629723 (+)
serp1 NA other upstream 1416069 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1732525 23163646 ~ 23259257 (+)
relt relt other upstream 1842910 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 221884 25233625 ~ 25240213 (+)
G104781 NA other downstream 283158 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1819237 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2199648 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2514382 27526123 ~ 27545526 (+)

Expression


Co-expression Network