LOC113526414 (LOC108263931,LOC108265089,LOC108443054)


Basic Information

Item Value
gene id LOC113526414
gene name LOC108263931,LOC108265089,LOC108443054
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19354126 ~ 19360323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913410.2
TGTCAGAGGTGTCCAAGAGTCCAGCTACAACACTGAAGGGGTTACAGAGCTCAGTGGCTGAAATATGATAACCTGTGCAGACCTCAAAAATATCATCAGCTTTTCACAGATCCAGCTCTATGAGAAAGTGGCCAGAAGGAAGGCAATGTTAGACAATCTAAGAGCTTTTGGTtcacaaaaaacattttgtggttTCCTTTTAAATTGACAgaggaatggaagaaaatgtgGATACTTTCTGGAGGCAATGTACCTATATTCTCATTGTGTGTTGTGGAATCATTGTGCAAAATATACACAACCCTGCAGTGAAAAAGCACTTGATTTTGTGTACAggtaaacattaaacacactcagtatAGCCTTACTAATTGGTAGGTGCCAAAAGCCAAGTCACACTTAAAGAGGGAGACCAAGAGAGATGATATCACCAttattaatttacacattttacttattcatttgttttaagtattttttgcttttatgaCTTGAAACAaggcagagagaggaaaaagagaaagacagtaGGGAGAAGAGCAAATTTCTTGTATCATAGAAGAACTGCTATATCAGATTGGGCTTTCTGTACTTGGGAAATGACACGCTCCTTGCAACAGTTGTTCCGAGACTACCTAGCAAAGCAGCGCATTCGCAAAAACCGGCTGGTAACCAAAGATGGACACTGCAACATTGAATATGGCAACGTGAGGTACAGCAGTCGCTTTGCATATGTGCAGGATTTCTGGACCACCTTTGTGGAGATACGTTGGCGtttcattattttactatttgtGGCCTCCTTCACTCTTAGCTGGTTCATTTTTGGACTTATTTGGTACTGGATTGCTCATGATAATGGTGATCTTTGGTGGCAAAATCCACCTTCAGACCACAAAccatgtatatataatgtttttggcCTCACAACTGCCTTCCTTTACTCACTTGAAACACAGATGACTATTGGTTATGGTCTGCGAGTGCTCAGTCCATACTGCCCTGGTGCTGTCTCCCTAATAATTATCCAGTCCATcattggtttatttattaactgtTTCTGGTGTGGACTGGTTATGGCCAAGATCACCTTACCCAAGAAAAGAGCCAAGACCATTACCTTTAGCAAAATGGCAGTTATTTGTCCCAAAAATGCTGCCCTCTGTTTGCAAATAAGAGTGGCCAACTTGCGTAAGACCTTAATGATTGGAAGCCAGCTATATGGCAAGTTGCTCAGGACAACAGTCAGTCCAGAAGGCGAGACCATAATTCTGGACCAGGTCAATATTGATTTTATGGTTGATGCTGGAAAAGACAACCTGTTCTTCATTTGTCCTTTGACCTTGTATCATGTGATTGATAAGACaagtccattttttaaatttgctttggACACACTTCTTCAACAGGAGTTTGAGCTGGTGGTATTTTTGGACGGCACAGATGAATCTACAAGCTCCTCCTGCCAGGTCAGGACTTCCTACATTCCTCAGGAGATTAAGTGGGGTTATAAGTTCCTCCCCATCATCTCCCGCAGTAAAGAAGGGAAATATCATGTGGACTTCTCCAATTTTGACAGAGTGGAGCCAACTCCAACTGCACACTGTGCTCACTGCTTCTATAATGGCCAAAGCCATCATCACAGCCCCAGAAATGGCATTGACAACCAGGGGTTTGAAGTAATTGAAGTAGATGATCGAATCAGTGGTACTGAGATGTAAGATAGCCCTCTGCATTCAGCTATACTGATTATGCTCTATAGCACAAATTATAACAATCAGTTGAAAATAGGAacctaaggcacatattcaggcaatgctaatttttcagctttaaaaGGATTGCCTGTATATATTCCctaggtttccattttcaactgattaaaacattcaacataataaaagtacaatagCTGAAGCTTACTGACAGTGTTTGCATGATCCATTCTGACTTTTAGCAGCATATGatgaaacaaaagctgtgcattagaaaacaaaacaaaaaaaatggctagCTTTCACTGGTGTGACTCACAAGGGGGTGTGTCTGAAGCACAGGGCTTTTCTTATTCTGCTCTTGGTTTGTGTTTTGTCAGTTACGTAGCTCTTTGTAGCAGATGTGTTTCAAATCCTGTCTTTTAATGGTCTATAGCCTGAATTGAATCAGTGAAGAAAGGTTGAATTTcctgttgtttgtgtgtgtggtgcaccGTATCATGGTGCACTGTATTAGCCGTATATTTGCGGTATTAGGGCTGGTGTATTGTTCACATATTTGGTGGATTCACCAAACTGTAATATTTTGGCCCACAACTCACTGGCTATCAGTGAGTTGGGAAGCCAAAGTGTTCCAATATATCAGACTTTAATGACTTACGAGAACTTTCAGTTCCTGTTTGCTGAAAGATAAtcacatatatactgtatatgggtgTACCATAATGCCTAAAATATCCATGTCTGGTTTCAGCTTCAAATTTTTACTGAAATTGGGTGTGGTCTGTAtcggaattaaaaaaaaaaaaatcttttgatcCAAAGACCATAATTTATTCACGCTTCTTTTGGCAGATTTTTCCCAGAGATATCAAATTTGACTTTGAAACTCCATCTTGACAGTCTGTTTCAACTGTGTATATTTATCTTACTTTTCCTGAACCGCttgaataaaattaataagaaacccttaaactgatttttaaagtatttgACCAGGCTCAATCCTCTTAGTGCAAAGAAATACACCTCtgtttgggttactgtctgtgtggagtttcaaaTGTTCTCCCTCTAtttgtgtgtttcctctgggttcctcCAGGGTATATCCCAAGTTtagcttttttccccagtgtttcAAGGATAGGCTCAGGAACCACTGTGATATACATCATATCTATTAgctctgtttcctgttttgatTGTTTATACTATGCCTCTGTTTTCTGTACTGAAAGTTATTTGTAAATTTAGGGCATGATTTAAAattgttaaaggtgcagttCTAAAAATGGGGACCATGTCAAGTCTAGcaagtaattttatttatattttatttgtgaaattaaagaaaaattatgcaatatattttttaaaaattgcatttttttggctgtt

Function

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 1-like

GO: NA

KEGG:

id description
K04995 KCNJ1, KIR1.1; potassium inwardly-rectifying channel subfamily J member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913410.2 True 3116 mRNA 0.39 2 19354126 19360323

Neighbor

gene id symbol gene type direction distance location
spred3 spred3,LOC108264009,LOC107554984 coding upstream 45325 19295492 ~ 19308801 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding upstream 70423 19279150 ~ 19283703 (+)
zgc:162879 NA coding upstream 114149 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 621312 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 1112517 18224061 ~ 18241609 (+)
lmo2 lmo2,LOC107554475 coding downstream 158280 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 197697 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 212980 19573303 ~ 19581510 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding downstream 229204 19589527 ~ 19609798 (+)
st14a st14 coding downstream 275128 19635451 ~ 19660991 (+)
LOC117597536 NA non-coding upstream 14327 19335998 ~ 19339799 (+)
G101855 NA non-coding upstream 18344 19335581 ~ 19335782 (+)
G101824 NA non-coding upstream 52165 19301254 ~ 19301961 (+)
G101813 NA non-coding upstream 82011 19271853 ~ 19272115 (+)
G101812 NA non-coding upstream 86581 19267319 ~ 19267545 (+)
LOC117597585 NA non-coding downstream 2410 19362733 ~ 19386937 (+)
G101904 NA non-coding downstream 126078 19486401 ~ 19487282 (+)
G101919 NA non-coding downstream 224862 19585185 ~ 19585435 (+)
G101990 NA non-coding downstream 346028 19706351 ~ 19707573 (+)
G102050 NA non-coding downstream 494194 19854517 ~ 19854743 (+)
G101602 NA other upstream 230249 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 231629 18957428 ~ 19122497 (+)
G101466 NA other upstream 559853 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 614128 18738343 ~ 18739998 (+)
G101419 NA other upstream 754751 18598714 ~ 18599375 (+)
cdon cdon other downstream 559726 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 644033 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 716642 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1278437 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1484351 20844674 ~ 20849338 (+)

Expression


Co-expression Network