LOC113526476 (LOC108263963)


Basic Information

Item Value
gene id LOC113526476
gene name LOC108263963
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21623853 ~ 21634557 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913536.2
GCACGCACGCGCTCCAGGCGCCATTTCGCGGTTTGAGCAGCTCTTCAGTCCCAATGGGAAAGCAAAGAGTCTCCGcgttaaataaaacttttctgCGCGTTTTAAATGCCAAAGGGATTCACTACGACTGGAGGACATGTCCGAAAGAGGAAAAACAAGGATTCGAGACTTCAGGTCTTCAAGACGCCAACTTCATCCCAGCATTTCATCAGGTGTGAACACCAGCAGTGGCAGTTTCCCCAAATCACATTCTTCCCATTACTCTGAAGTcagtgatacacacactcctctctcagTGGAGCACACAACAGACTCCGGCATCGTCGCCACTCCAcTGCCATCCAGTCGATTCCGATTCACCTCATGGCATCAGATCGAGGAAACCGATGTTCGTGGAGACCAACTGGCTTGTCCAAGAGTCAGAGAGGGACCTGTAGAAGATGACCATGCTCTTAGGAGCGGGAAGATCTTTAACAAGAAtagcaggaggaagaggagagaaaatgaCGAGCAAACGTGGGAGGAGAGGCTGCAGGAGAATTGGGAGAACTGTACGGAACTGAATCTGTCCTACCAGGATCTGGGAGATGAGTATCAGCTGGAAAATTTCAGGCGAATCCTGAGAAGGCTGATCCGAGTGGAGCACCTGCAGCTGGTGGACAATGCACTGTGTGACCTCAGCTCCATCCGACTgccaagATGTAAAAGCCTGAACCTGCACCGGAATCACTTGAAGTCTCTCGCTCAGCTGCCAAAGATCCCTGCAATTGAgcaactgtgtgtgtctgagaacAACATCAGCAGTCTGGCAGAGCTGAAGCTGCTGGAACACACACcgctgcacacactcacactcagacaTAACCCCTGTGAGTTCTTGGAGGACTACCGCTCACGTGTATTCTCCTATTTGCCAAAACTCAAAGTCCTGGACGGCATCCCAAAGCTGCCAGAAGATTCGGTGCCTCTCTGTTTCCCAGAATCCTCCAGGCTTTGTATCATTCTGTGATGTTGGCAGATCTTGGACAGGATGTCCAGCCTAATGGACAGGAACCAGCAAAAGCCAACATCTCTTCTACCAGAAATGAGAATGTCCCATTTCTAAAATGCACtatttgtatataatttgtCAGTTTGTATTGCAAATTAAAGCAgtctatttttttgttatt
>XM_026913538.2
GCACGCACGCGCTCCAGGCGCCATTTCGCGGTTTGAGCAGCTCTTCAGTCCCAATGGGAAAGCAAAGAGTCTCCGcgttaaataaaacttttctgCGCGTTTTAAATGCCAAAGGGATTCACTACGACTGGAGGACATGTCCGAAAGTTCATCAGGTGTGAACACCAGCAGTGGCAGTTTCCCCAAATCACATTCTTCCCATTACTCTGAAGTcagtgatacacacactcctctctcagTGGAGCACACAACAGACTCCGGCATCGTCGCCACTCCAcTGCCATCCAGTCGATTCCGATTCACCTCATGGCATCAGATCGAGGAAACCGATGTTCGTGGAGACCAACTGGCTTGTCCAAGAGTCAGAGAGGGACCTGTAGAAGATGACCATGCTCTTAGGAGCGGGAAGATCTTTAACAAGAAtagcaggaggaagaggagagaaaatgaCGAGCAAACGTGGGAGGAGAGGCTGCAGGAGAATTGGGAGAACTGTACGGAACTGAATCTGTCCTACCAGGATCTGGGAGATGAGTATCAGCTGGAAAATTTCAGGCGAATCCTGAGAAGGCTGATCCGAGTGGAGCACCTGCAGCTGGTGGACAATGCACTGTGTGACCTCAGCTCCATCCGACTgccaagATGTAAAAGCCTGAACCTGCACCGGAATCACTTGAAGTCTCTCGCTCAGCTGCCAAAGATCCCTGCAATTGAgcaactgtgtgtgtctgagaacAACATCAGCAGTCTGGCAGAGCTGAAGCTGCTGGAACACACACcgctgcacacactcacactcagacaTAACCCCTGTGAGTTCTTGGAGGACTACCGCTCACGTGTATTCTCCTATTTGCCAAAACTCAAAGTCCTGGACGGCATCCCAAAGCTGCCAGAAGATTCGGTGCCTCTCTGTTTCCCAGAATCCTCCAGGCTTTGTATCATTCTGTGATGTTGGCAGATCTTGGACAGGATGTCCAGCCTAATGGACAGGAACCAGCAAAAGCCAACATCTCTTCTACCAGAAATGAGAATGTCCCATTTCTAAAATGCACtatttgtatataatttgtCAGTTTGTATTGCAAATTAAAGCAgtctatttttttgttatt

Function

NR:

description
PREDICTED: protein tilB homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913536.2 True 1172 mRNA 0.49 8 21623853 21634557
XM_026913538.2 False 1115 mRNA 0.49 7 21623853 21634557

Neighbor

gene id symbol gene type direction distance location
ppfia1 ppfia1 coding downstream 49007 21495122 ~ 21574846 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 131372 21467974 ~ 21492481 (-)
LOC113526809 ltbp4 coding downstream 374350 21149063 ~ 21249503 (-)
esrrd LOC108263916 coding downstream 486572 21127948 ~ 21137281 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding downstream 603312 21013235 ~ 21020541 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding upstream 7081 21641638 ~ 21664327 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding upstream 702203 22336760 ~ 22341441 (-)
LOC113526884 NA coding upstream 1515551 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 1524175 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 1662798 23297355 ~ 23299010 (-)
G102808 NA non-coding downstream 304301 21318140 ~ 21319552 (-)
G102809 NA non-coding downstream 311385 21309303 ~ 21312468 (-)
G102691 shkbp1 non-coding downstream 498898 21123315 ~ 21124955 (-)
G102600 LOC108264595 non-coding downstream 620073 20995525 ~ 21003780 (-)
G102458 NA non-coding downstream 937668 20638871 ~ 20686185 (-)
G103099 NA non-coding upstream 161216 21795773 ~ 21796243 (-)
G103156 LOC107737118 non-coding upstream 589028 22223585 ~ 22224021 (-)
G103158 NA non-coding upstream 589772 22224329 ~ 22224564 (-)
G103159 NA non-coding upstream 593071 22227628 ~ 22227863 (-)
G103161 NA non-coding upstream 593828 22228385 ~ 22228716 (-)
sertad3 sertad3 other downstream 610753 20995341 ~ 21013100 (-)
G102566 NA other downstream 656943 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 1207279 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1643594 19980069 ~ 19980259 (-)
G101178 NA other downstream 3427047 18187447 ~ 18196806 (-)
si LOC108264758,LOC108431149 other upstream 596891 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 1956388 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 2014127 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2098313 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 2845745 24480302 ~ 24574675 (-)

Expression


Co-expression Network