nptnb (nptn,LOC108431650,LOC107715830)


Basic Information

Item Value
gene id nptnb
gene name nptn,LOC108431650,LOC107715830
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26648551 ~ 26681425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913539.2
cacacgcgcacacgcacgcacacacacacacactaactgaaTGACATCCCGCAGCTTTTCTTCCTCTGCAATGCCGTGACTGACTCGATCTCAGATGGCTCTCTATCCGCTTCCATGAGCATCTTCCATGAGGAGCCGTCGCTGCTTGACCGCTTAAAGCCGCCGCTTGTTTTGCCAGTCGACGTCCGAGCGGGTGTTTTTGGCCCTCATCTGCGCTCGCGTTTGCGcatcctcttcttcttcacGCGCTCCGTGCCCTATACGATCCGCTCACATCCTCCTCGAGCCGCACGAAATTATCCCACAGCAATGTGTCCGTGTGCGACGATGCTGGCGATCGCTGTCTTTCTCGGAAACGTAATGCTACAGTATGTGTCGTCTCAAAACGCTGGGTTTGTGAAGTCGCCCATGTCTGAGACAAAGCTCACGGGAGACACCTTTGAGCTGTACTGTGACGTGGTTGGTAACCCCACGCCGGAGATCCAGTGGTGGTACGCTGAGATAAACCGCGCCGACTCCTTCAAGCAGCTGTGGGACGGCGCCCGGAAGCGGCGCGTCTCCATCAACACGGCCTACGGCACCAACGGCGTGAGTGTACTGGGTGTCACGCGCCTCACGCTCGAGGACTCTGGAACCTACGAATGCCGGGCCAGTAACGACCCGCGCCGCAACGACCTGCGCCAAAACCCTGCCATCACCTGGATCCGAGCTCAGGCCACCATTTCCGTGTTGCAGAaGCCAAAGATCAATGCTTCTGATCAGGAAATTTTGCCAGCTAAAAAGCCACAGGAAGACAATCTTCCTGTTACCTTACAGTGTAATCTAACCAACGCTCACACCACCCACCGGGAAAGCTTCTGGATGAAGAACGGAGATGAAATCCCGAATACAAGAAAAGGACTGAAAAACACAGAGCTTACACTCAACAAACCAAGAGCAGAAGACGCAGGAGAGTATATGTGCGTGTATACTTTTGACAAGGCTCCCAATGCCAATGCGTCCATTGAAGTCAAAGCCGCTCCTGAAATCACTGGTCACAAGCGAAGCgagaataaaaaagaaggagaaagcgCTCTCTTGTACTGCAAGTCTGTGGGATACCCACATCCCATCTGGACATGGAGGAAAAAAGTCAGCCAGGGATCATACGTAGACATTGACAACAGTACTGGACGCTTCTTCATCATGAACAAAGACAATTACACAGAACTGAACGTTATAAATCTTGACATTAGTACAGACCCTGGCGAGTATGTCTGCAGTGCCTCAAACGTCATTGGGACTAAAGAATCAACATCTATTCTGCGGGTGCGTAGTCACCTGGCCCCGCTCTGGCCTTTCCTTGGTGTACTGGCAGAAATCCTCATCCTGGTGGTCATCATTGTGGTTTACGAGAAACGCAAGAGGCCAGATGAGGTGCAAGACGatgatgaaccAGCTGGATCAGTGAAAACCAATTCTACTAACAACCACAAAGACAAAAACCTGAGACAACGCAACACCAACTGAACAAATACAGCAAATAACAATACTGACTGCACATCTTGACCGTATGAAGGTATCCAAGGAGAGCAGAAGCTCCTGGCCATTTCTAATAAAGCATATCCTGCCTCACTCGGCCAACGAAACAGCAACAGCATATCACTGGCAGAAAAGAACAATAAGGACTGTCTTAAAGCATGCCTTATTCAGTCTAATggtatgtgagtatgtgtggGCACAACTGATCCAATTCATTCAAAAGGTGTGCACATTATTTTTACTCTTCtgtgctgttctttttttccttttatcatGCCATCCTTCTGAGGCAACCCTTTTGCATACTTGCATATCGTGTCGAATGCATGCAGTAACATATCCTAATaacatgccatttttttctattgttaTCCCTTTGTGTGGTGTTGCTTCAGAGGATTaccctaagtgtgtgtgtgtgtgtttttttttaagaaattcaAATTGAGATAAAAAGTCAGATCCACTCATTGAGTTCTTTGTACAGTTTATCATCAGctcataaaattaaacaaaggtGTTCTATGTAAAGCTGGACTGCAAGAGCCTAGCTTTGACTGGCAGAGCAGTATTTAATCACGGAGAACTGTCTATGtattaaagaattttaaaagatgaataaaggttatttattttctaGAATTACCTAGATGTCTTGTACAGGTTGAGCTGTAAGTGTTCAAATATTATAATAGCATATCTGTAAAAAGTGAAGAAGTTTTTTAATCCTCTATGTCCTCCGACCTTGTTTCTTTTTAGTCAGATATGAATCTTGTATAGCATGGCTATTATCCTATGCAATATGTATTCAAATAGAATTAATGGCAACTGTACACTGGGCCGCGTTCGTTTTGATGAATTTCAGAGACTAagctttaatgttgtgggatcGTTGGGATGCAGGAACAGCATAAATGCACTGCTGTAGTTGCATGACTACTTCTCTTAAAGAAAACGATGtatcagtgtgttgcagtgcaACTGGACCAATAAGTAAAGACGGCACCTGCTGGAGCTAAAGCCATTACAATAATATGTGAGACCAactgttctttttaaaataaaggctcaaaaatatgaatgaa
>XM_026913540.2
cacacgcgcacacgcacgcacacacacacacactaactgaaTGACATCCCGCAGCTTTTCTTCCTCTGCAATGCCGTGACTGACTCGATCTCAGATGGCTCTCTATCCGCTTCCATGAGCATCTTCCATGAGGAGCCGTCGCTGCTTGACCGCTTAAAGCCGCCGCTTGTTTTGCCAGTCGACGTCCGAGCGGGTGTTTTTGGCCCTCATCTGCGCTCGCGTTTGCGcatcctcttcttcttcacGCGCTCCGTGCCCTATACGATCCGCTCACATCCTCCTCGAGCCGCACGAAATTATCCCACAGCAATGTGTCCGTGTGCGACGATGCTGGCGATCGCTGTCTTTCTCGGAAACGTAATGCTACAGTATGTGTCGTCTCAAAACGCTGGGTTTGTGAAGTCGCCCATGTCTGAGACAAAGCTCACGGGAGACACCTTTGAGCTGTACTGTGACGTGGTTGGTAACCCCACGCCGGAGATCCAGTGGTGGTACGCTGAGATAAACCGCGCCGACTCCTTCAAGCAGCTGTGGGACGGCGCCCGGAAGCGGCGCGTCTCCATCAACACGGCCTACGGCACCAACGGCGTGAGTGTACTGGGTGTCACGCGCCTCACGCTCGAGGACTCTGGAACCTACGAATGCCGGGCCAGTAACGACCCGCGCCGCAACGACCTGCGCCAAAACCCTGCCATCACCTGGATCCGAGCTCAGGCCACCATTTCCGTGTTGCAGAaGCCAAAGATCAATGCTTCTGATCAGGAAATTTTGCCAGCTAAAAAGCCACAGGAAGACAATCTTCCTGTTACCTTACAGTGTAATCTAACCAACGCTCACACCACCCACCGGGAAAGCTTCTGGATGAAGAACGGAGATGAAATCCCGAATACAAGAAAAGGACTGAAAAACACAGAGCTTACACTCAACAAACCAAGAGCAGAAGACGCAGGAGAGTATATGTGCGTGTATACTTTTGACAAGGCTCCCAATGCCAATGCGTCCATTGAAGTCAAAGCCGCTCCTGAAATCACTGGTCACAAGCGAAGCgagaataaaaaagaaggagaaagcgCTCTCTTGTACTGCAAGTCTGTGGGATACCCACATCCCATCTGGACATGGAGGAAAAAAGTCAGCCAGGGATCATACGTAGACATTGACAACAGTACTGGACGCTTCTTCATCATGAACAAAGACAATTACACAGAACTGAACGTTATAAATCTTGACATTAGTACAGACCCTGGCGAGTATGTCTGCAGTGCCTCAAACGTCATTGGGACTAAAGAATCAACATCTATTCTGCGGGTGCGTAGTCACCTGGCCCCGCTCTGGCCTTTCCTTGGTGTACTGGCAGAAATCCTCATCCTGGTGGTCATCATTGTGGTTTACGAGAAACGCAAGAGGCCAGATGAGGTGCAAGACGCTGGATCAGTGAAAACCAATTCTACTAACAACCACAAAGACAAAAACCTGAGACAACGCAACACCAACTGAACAAATACAGCAAATAACAATACTGACTGCACATCTTGACCGTATGAAGGTATCCAAGGAGAGCAGAAGCTCCTGGCCATTTCTAATAAAGCATATCCTGCCTCACTCGGCCAACGAAACAGCAACAGCATATCACTGGCAGAAAAGAACAATAAGGACTGTCTTAAAGCATGCCTTATTCAGTCTAATggtatgtgagtatgtgtggGCACAACTGATCCAATTCATTCAAAAGGTGTGCACATTATTTTTACTCTTCtgtgctgttctttttttccttttatcatGCCATCCTTCTGAGGCAACCCTTTTGCATACTTGCATATCGTGTCGAATGCATGCAGTAACATATCCTAATaacatgccatttttttctattgttaTCCCTTTGTGTGGTGTTGCTTCAGAGGATTaccctaagtgtgtgtgtgtgtgtttttttttaagaaattcaAATTGAGATAAAAAGTCAGATCCACTCATTGAGTTCTTTGTACAGTTTATCATCAGctcataaaattaaacaaaggtGTTCTATGTAAAGCTGGACTGCAAGAGCCTAGCTTTGACTGGCAGAGCAGTATTTAATCACGGAGAACTGTCTATGtattaaagaattttaaaagatgaataaaggttatttattttctaGAATTACCTAGATGTCTTGTACAGGTTGAGCTGTAAGTGTTCAAATATTATAATAGCATATCTGTAAAAAGTGAAGAAGTTTTTTAATCCTCTATGTCCTCCGACCTTGTTTCTTTTTAGTCAGATATGAATCTTGTATAGCATGGCTATTATCCTATGCAATATGTATTCAAATAGAATTAATGGCAACTGTACACTGGGCCGCGTTCGTTTTGATGAATTTCAGAGACTAagctttaatgttgtgggatcGTTGGGATGCAGGAACAGCATAAATGCACTGCTGTAGTTGCATGACTACTTCTCTTAAAGAAAACGATGtatcagtgtgttgcagtgcaACTGGACCAATAAGTAAAGACGGCACCTGCTGGAGCTAAAGCCATTACAATAATATGTGAGACCAactgttctttttaaaataaaggctcaaaaatatgaatgaa
>XM_026913541.2
cacacgcgcacacgcacgcacacacacacacactaactgaaTGACATCCCGCAGCTTTTCTTCCTCTGCAATGCCGTGACTGACTCGATCTCAGATGGCTCTCTATCCGCTTCCATGAGCATCTTCCATGAGGAGCCGTCGCTGCTTGACCGCTTAAAGCCGCCGCTTGTTTTGCCAGTCGACGTCCGAGCGGGTGTTTTTGGCCCTCATCTGCGCTCGCGTTTGCGcatcctcttcttcttcacGCGCTCCGTGCCCTATACGATCCGCTCACATCCTCCTCGAGCCGCACGAAATTATCCCACAGCAATGTGTCCGTGTGCGACGATGCTGGCGATCGCTGTCTTTCTCGGAAACGTAATGCTACAGTATGTGTCGTCTCAAAACGaGCCAAAGATCAATGCTTCTGATCAGGAAATTTTGCCAGCTAAAAAGCCACAGGAAGACAATCTTCCTGTTACCTTACAGTGTAATCTAACCAACGCTCACACCACCCACCGGGAAAGCTTCTGGATGAAGAACGGAGATGAAATCCCGAATACAAGAAAAGGACTGAAAAACACAGAGCTTACACTCAACAAACCAAGAGCAGAAGACGCAGGAGAGTATATGTGCGTGTATACTTTTGACAAGGCTCCCAATGCCAATGCGTCCATTGAAGTCAAAGCCGCTCCTGAAATCACTGGTCACAAGCGAAGCgagaataaaaaagaaggagaaagcgCTCTCTTGTACTGCAAGTCTGTGGGATACCCACATCCCATCTGGACATGGAGGAAAAAAGTCAGCCAGGGATCATACGTAGACATTGACAACAGTACTGGACGCTTCTTCATCATGAACAAAGACAATTACACAGAACTGAACGTTATAAATCTTGACATTAGTACAGACCCTGGCGAGTATGTCTGCAGTGCCTCAAACGTCATTGGGACTAAAGAATCAACATCTATTCTGCGGGTGCGTAGTCACCTGGCCCCGCTCTGGCCTTTCCTTGGTGTACTGGCAGAAATCCTCATCCTGGTGGTCATCATTGTGGTTTACGAGAAACGCAAGAGGCCAGATGAGGTGCAAGACGatgatgaaccAGCTGGATCAGTGAAAACCAATTCTACTAACAACCACAAAGACAAAAACCTGAGACAACGCAACACCAACTGAACAAATACAGCAAATAACAATACTGACTGCACATCTTGACCGTATGAAGGTATCCAAGGAGAGCAGAAGCTCCTGGCCATTTCTAATAAAGCATATCCTGCCTCACTCGGCCAACGAAACAGCAACAGCATATCACTGGCAGAAAAGAACAATAAGGACTGTCTTAAAGCATGCCTTATTCAGTCTAATggtatgtgagtatgtgtggGCACAACTGATCCAATTCATTCAAAAGGTGTGCACATTATTTTTACTCTTCtgtgctgttctttttttccttttatcatGCCATCCTTCTGAGGCAACCCTTTTGCATACTTGCATATCGTGTCGAATGCATGCAGTAACATATCCTAATaacatgccatttttttctattgttaTCCCTTTGTGTGGTGTTGCTTCAGAGGATTaccctaagtgtgtgtgtgtgtgtttttttttaagaaattcaAATTGAGATAAAAAGTCAGATCCACTCATTGAGTTCTTTGTACAGTTTATCATCAGctcataaaattaaacaaaggtGTTCTATGTAAAGCTGGACTGCAAGAGCCTAGCTTTGACTGGCAGAGCAGTATTTAATCACGGAGAACTGTCTATGtattaaagaattttaaaagatgaataaaggttatttattttctaGAATTACCTAGATGTCTTGTACAGGTTGAGCTGTAAGTGTTCAAATATTATAATAGCATATCTGTAAAAAGTGAAGAAGTTTTTTAATCCTCTATGTCCTCCGACCTTGTTTCTTTTTAGTCAGATATGAATCTTGTATAGCATGGCTATTATCCTATGCAATATGTATTCAAATAGAATTAATGGCAACTGTACACTGGGCCGCGTTCGTTTTGATGAATTTCAGAGACTAagctttaatgttgtgggatcGTTGGGATGCAGGAACAGCATAAATGCACTGCTGTAGTTGCATGACTACTTCTCTTAAAGAAAACGATGtatcagtgtgttgcagtgcaACTGGACCAATAAGTAAAGACGGCACCTGCTGGAGCTAAAGCCATTACAATAATATGTGAGACCAactgttctttttaaaataaaggctcaaaaatatgaatgaa

Function

symbol description
nptn Predicted to enable cell-cell adhesion mediator activity and type 1 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including generation of neurons; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of cell communication. Predicted to act upstream of or within excitatory synapse assembly; modulation of chemical synaptic transmission; and regulation of receptor localization to synapse. Located in cell surface.

NR:

description
PREDICTED: neuroplastin-like isoform X1

GO: NA

KEGG:

id description
K22653 NPTN; neuroplastin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913539.2 True 2606 mRNA 0.45 9 26648551 26681425
XM_026913540.2 False 2594 mRNA 0.45 9 26648551 26681425
XM_026913541.2 False 2258 mRNA 0.43 8 26648551 26681425

Neighbor

gene id symbol gene type direction distance location
LOC113526591 NA coding upstream 3722 26636409 ~ 26644829 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding upstream 14054 26622446 ~ 26634497 (+)
LOC113526907 LOC108264702 coding upstream 26409 26614822 ~ 26622142 (+)
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding upstream 70007 26568595 ~ 26578544 (+)
chrnb4 chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347 coding upstream 83340 26554468 ~ 26565211 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding downstream 13458 26694883 ~ 26789255 (+)
dhdh.2 dhdh,LOC108431994 coding downstream 139742 26821167 ~ 26827022 (+)
LOC113526325 parp6 coding downstream 169537 26850962 ~ 26875332 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding downstream 231903 26913328 ~ 27063061 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding downstream 424041 27105466 ~ 27107571 (+)
G105479 LOC108264702 non-coding upstream 37291 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 116463 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 120744 26525920 ~ 26527807 (+)
G105446 NA non-coding upstream 131771 26513436 ~ 26516780 (+)
G105320 NA non-coding upstream 325051 26320009 ~ 26323500 (+)
G105490 NA non-coding downstream 10009 26691434 ~ 26691677 (+)
G105548 NA non-coding downstream 16553 26697978 ~ 26698178 (+)
G105733 NA non-coding downstream 381930 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 383266 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 447923 27129348 ~ 27129629 (+)
G104781 NA other upstream 1333338 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1408338 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2885506 23739502 ~ 23763045 (+)
G103830 NA other upstream 3018828 23615103 ~ 23629723 (+)
serp1 NA other upstream 3072838 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 149553 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 529964 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 844698 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1263365 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1385457 28066882 ~ 28070685 (+)

Expression


Co-expression Network