chrnb4 (chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347)


Basic Information

Item Value
gene id chrnb4
gene name chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26554468 ~ 26565211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913603.2
aggagcagaagaggaggagaggatcAGGAGCgcaggagaggagaagaggagcagaagaggaggagaggatcAGGAGCGCAGGAGCGCAGTGCTGCTGTGTATTATTACAGGGAGGGGAAAACCACAGCTCTCTGTATTCACGCCGACAGGAAACAGCTGCACGCTCTGAAACCGACCcggtgagtgtgtgggtgtgtgtgcaggtcCGTCCGGTGAAGATAAGGCGCGTCCCCGCTGCGTGTGAGCGCGTGATGGGAGTGAGTGAAGGGAGCGCGCACGGACAACGCGGCGTCGACCATGACACGGACCCTCGGCACCCTCCTTTACGCGTTTACCTTCGTCCAGAGTGCCATCTGTGCAGACTCTGAAGAGCGGCTCATGAACTGGCTCCTGTCAAAGGATCGTTACAACAACCTCATCCGGCCTGCCCTGAACAGAACGGAAAGAGTGACCGTGAAGCTGCAGGTCTCTCTGGCACAGCTCATCAGCGTGAATGAGAGGGAGCAAATCATGACGACAAACGTGTGGCTCACGCAGAACTGGAATGATTACAGACTGTCATGGGACCCGTCCAAATACGATGGAATTGACAAGCTCCGAATTCCCTCCAGACACATCTGGCTACCTGACATTGTGTTATACAATAATGCTGATGGCACATATGAGGTGACAGTCTTCACCAACGCTATTGTGCTGTTTAACGGCACCATCGCCTGGCTTCCTCCTGCCATCTACAAGAGCGCCTGCAAGATTGAGGTCAAACACTTCCCCTTTGACCAGCAGAACTGCACACTAAAGTTCCGCTCATGGACGTACGACCACACAGAGATCGATCTCGTCTTAAAGTCCGAAGTGGCCAGTATGGATGACTTCACTCCTAGTGGAGAGTGGGACATTTTAGCTCTGCCAGGAAGGAGGACAGTCAACCCTCAGGACCCGACTTATGTGGACCTGACGTATGATTTTATCATCAAGCGCAAACCTCTCTTCTACACCATCAACCTCATCATCCCCTGTGTGTTGATCACCTCTCTGGCCATCCTGGTTTTCTACTTACCATCTGATTGTGGTGAGAAGATGACCCTGTGCATCTCTGTCCTTCTGGCCCTCACTGTCTTCCTCTTGCTGATCTCCAAAATTGTTCCTCCTACATCCCTGGATGTCCCTCTAATCGGCAAATATCTGATGTTCACCATGGTGCTGGTGACATTCTCCATCATCACGAGTGTATGCGTGCTCAACGTGCATCATCGATCCCCAAGTACACATACCATGCCAAAATGGGTGAAGCTGGTCTTCCTGGACAAACTTCCCATGTTGCTTTTTATGCGAAGACCTGAAGGAAACTCATCCCGGCAGAGGCTACACCAGCGGAGACATCTCAAAGATAATAGAGCTCTGCTTGGGCTTAGTTGTGGAGCTCCCTGCAAGTCAGGAATGTCCTCTTCTGCCTCAGTCTTGCTTGCTGCATCTTCAGCATCAGCACTGTCTTCACCAGGACACTTTTACAGCAAAGGGACCAGCTTTTACAGGAAAGGTGATCAGCGACCTACGGAGTTCCTGCCCAATGGCAATGCCTTGAACCAAGGAGACACGAGAGGAGGTGGAGGGCTATCAGACCTGGGGGCTGATGTTCAAGAAGCAGTGGATGGAGTTCGTTATGTAGCTGACCACATGATGGGAAATGACGATGATCAGAATGTTATTGAAGACTGGAAGTACGTCGCCATGGTGGTGGATCGGATGTTTCTGTGGATctttgtaattgtgtgtgtggttgggacGTTGGGCCTTTTCCTTCAGCCAGTCTTCCAGAACCAGACAGTTCCTATCTATCAGCCGAATGCTGAATCCTCTAGGAGGGATGGGATGTAAAGAATGCATCAATATGGGATGACAAATACCAGATCTACATGTCCAAAAAAACGAGCCATGGTAGTAAGGCATTGAGCAAGGACTTGTGGTATAATCTTGAAGACAGTTTTCTTTTGGTATGCAGGATAAATTAGTCTTGAATGatggataaaaataatgaaGCCTTTATAATGGATGGCTAAATGTCTTCAGGATTACAGCACAAGTCAAATCACCTTGACTAACTTCTTTCTTTGCCTGTGAATACCTGAAAAACTTCTATAGACATCCAATCAGGACTAAAAATGTCACCAATTTTTGATTagtcatcatcagcatcatcgaTTAGCCAACATCACCTGCCTTCATAATGATGTCCACTGATATGGACAGCCACTGGTGCTTCAAGGTTATACGATTATATCAGGACACTTCACCTTAATACAAGGTCACTCTTcttctaaaaatattatttcaggCCAATAAACCagtgaattaaatatttattagtcAATGTTTAATGGTTCTCCTCTTTCTTCAGCTGTAGCAGGGCAATACAGCATTTTTACCGCAAATATTCAATTACCA

Function

symbol description
chrnb4 Contributes to acetylcholine receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Part of acetylcholine-gated channel complex. Is expressed in interpeduncular nucleus medulla oblongata and interpeduncular nucleus tegmentum. Orthologous to human CHRNB4 (cholinergic receptor nicotinic beta 4 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit beta-4

GO: NA

KEGG:

id description
K04815 CHRNB4; nicotinic acetylcholine receptor beta-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913603.2 True 2442 mRNA 0.48 6 26554468 26565211

Neighbor

gene id symbol gene type direction distance location
ubl7b LOC108264398 coding upstream 242966 26303120 ~ 26311502 (+)
insyn1 c4h15orf59 coding upstream 471195 26009102 ~ 26083273 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding upstream 676268 25872482 ~ 25878200 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding upstream 715179 25788638 ~ 25839289 (+)
dusp8b LOC108264845 coding upstream 776962 25767418 ~ 25777506 (+)
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding downstream 3384 26568595 ~ 26578544 (+)
LOC113526907 LOC108264702 coding downstream 49611 26614822 ~ 26622142 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding downstream 57235 26622446 ~ 26634497 (+)
LOC113526591 NA coding downstream 71198 26636409 ~ 26644829 (+)
nptnb nptn,LOC108431650,LOC107715830 coding downstream 83340 26648551 ~ 26681425 (+)
G105449 NA non-coding upstream 22380 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 26661 26525920 ~ 26527807 (+)
G105446 NA non-coding upstream 37688 26513436 ~ 26516780 (+)
G105320 NA non-coding upstream 230968 26320009 ~ 26323500 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding upstream 649180 25903826 ~ 25905288 (+)
G105479 LOC108264702 non-coding downstream 45730 26610941 ~ 26611260 (+)
G105490 NA non-coding downstream 126223 26691434 ~ 26691677 (+)
G105548 NA non-coding downstream 132767 26697978 ~ 26698178 (+)
G105733 NA non-coding downstream 498144 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 499480 27064691 ~ 27066023 (+)
G104781 NA other upstream 1239255 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1314255 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2791423 23739502 ~ 23763045 (+)
G103830 NA other upstream 2924745 23615103 ~ 23629723 (+)
serp1 NA other upstream 2978755 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 265767 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 646178 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 960912 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1379579 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1501671 28066882 ~ 28070685 (+)

Expression


Co-expression Network