LOC113526513 (cxcr5)


Basic Information

Item Value
gene id LOC113526513
gene name cxcr5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20051332 ~ 20054436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913612.2
aaaaaacaaaaaaacaagcagctGGAACAATGCTTCCTGGAAATACGGTCTGCTGCAGTTTTTTACGCTCTAAGTTCCTAGGTTCAGACTTAGGAAATCAGAATGAGTAAATGGTCTAGAAGAAGATGAGTAACATAAAAGAGCATATGATTTTTGACTTTTCAGATTTCCTGAGTAACGAGTCTGAAAACATCATGGTGAACTTATCCCACGAGCTCTTCACCTGTGACACTGAAAAAGACCCCCTGTTCCTGTACTATACTCTGCTCCAGCCACTAGTCTTCAGCATGGTGTTTCTGCTGGGCCTCTCAGGAAATGGCCTCCTGCTGCTGGTCTTGCTGCAGCGTCGTGCTCACCTACGCATGACTGACATCTATCTGCTGCATCTGGCCCTGGCTGATCTGCTCCTGCTCCTTACCTTACCTTTTGCAGTAATCCAAGTGCTGACAGGCTGGATCTTTGGGAACTTCCTGTGCAAGCTCGTAGGCCTGTTACACCGCCTGAATCTGGTGTGTGGGAGTCTTCTCCTTGCAGGCATTGGTTTTGATCGCTACCTCGCCATTGTTCATGTTGTCTCCAGCCTCCAGACCCGTCGGCCCCAAACAGTTCATCTCATCTGTGCTCTGCTCTGGCTATtttgtcttgctctctctgtgcCCAATGTAGTATTTCTTTCTGTGGGACCCAGAAGGAATGGCGATACATGGCTACAGTGTCACTTCAACAACCATGGCATCCATGCTAACGACTGGTTCCTCGTTAGTCGGTTCCTGACACACGTGTTGTGCTTCCTCCTGCCCTTAGTCATCATGGGCTACTGCTACACCGCTGTGGTGTTCACCCTGTACCACAGTCAACAGAGTCTGGAGAAGCAGGGGGCTATTCGTCTGGCTATGGTGGTAACCCTGGTTTTCTGCTTGTGCTGGCTACCCTATAACATAACCCTTTTTTTGGACACCCTTGTGAGGCTAGGGCTTCTGTCTCAGAAAACCTGTCAGTCTCGCGATGCACTGGCTCTGGGTCTGATGGTGACTGAGAGCATTGGTTTTATTCACTGCTGCCTTAATCCAATCCTTTATGCCTTTGTAGGGGTGCGTTTTCGTAATGATCTTCTGAGATTGCTGCCAAAACAATTCCGTGTCTGTGGGCCCATGCTATGCGCCAGATGCTTCAGCAAGGTATCTGTCTCAGACAcggctaccaccaccaccactactagcCAATACATATGAGCACAGAAACTGGAAAGAAACTCGCTGAAAGTATGCAATCATTCAATGATGAGAGtccttttttctaaataaaagcagagcttattttaattttgaccCTCTTAGCCGTCTGTCTGATAATCTATGGCTTACACATTTAGCTATGCAGTGATGCAAttctggaaaaaatatttacagagcATGCATGAGTGTGCAGGATATCTGAATGAGATTCTACTTTTATCATTGTAAATATTCTATGCCTACAGTTTAACATTTCCCATAGCTGGTGAGTGCTCTTCAAAGTAATATTTGATGCAAGATAACAGAcataagagatttaaaaaaataaaacagtttccCTGA

Function

symbol description
cxcr5 Predicted to enable chemokine receptor activity. Acts upstream of or within regulation of neurogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in telencephalon.

NR:

description
PREDICTED: C-X-C chemokine receptor type 5

GO: NA

KEGG:

id description
K04190 CXCR5, BLR1, CD185; C-X-C chemokine receptor type 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913612.2 True 1577 mRNA 0.46 2 20051332 20054436

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a,LOC108264692 coding downstream 554339 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 717902 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1309608 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1527106 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 2326012 17720545 ~ 17725320 (-)
nectin1b nectin1 coding upstream 160706 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 307894 20362330 ~ 20377332 (-)
ccnp NA coding upstream 328374 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 367837 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 405907 20460343 ~ 20464685 (-)
G102147 NA non-coding downstream 51009 20000101 ~ 20000323 (-)
G102146 NA non-coding downstream 52151 19998963 ~ 19999181 (-)
G102129 cdon non-coding downstream 83555 19943711 ~ 19967777 (-)
G102082 NA non-coding downstream 196569 19854530 ~ 19854763 (-)
G101955 NA non-coding downstream 465493 19585640 ~ 19585839 (-)
G102224 NA non-coding upstream 35155 20089591 ~ 20092328 (-)
G102225 NA non-coding upstream 38548 20092984 ~ 20093802 (-)
G102270 NA non-coding upstream 189899 20244335 ~ 20290991 (-)
G102271 NA non-coding upstream 202896 20257332 ~ 20263140 (-)
G102272 NA non-coding upstream 227749 20282185 ~ 20356597 (-)
LOC113527007 NA other downstream 71073 19980069 ~ 19980259 (-)
G101178 NA other downstream 1854526 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4693769 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5704324 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6488758 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 341430 20395866 ~ 20416574 (-)
G102566 NA other upstream 899166 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 940905 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2177012 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3536509 23590945 ~ 23610448 (-)

Expression


Co-expression Network