dhx34 (dhx34)


Basic Information

Item Value
gene id dhx34
gene name dhx34
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19309888 ~ 19333430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913714.2
TAGAAATGGCTGCTTGTGTGAATGTTTTCGTTATGACGCGGACATCACGTGACAGTGCAGCTCCAAGTGGAAATGAACGCTGCAGGGGCAGGAGCAGCGCTGATGCCACTGTGTAGCTGTGGCTCAGTCCAGTGCAACCCGTCGAGCACGCGTGGTTTACTCGCTTTTTTGTAGACGGGGGGAAGTGAGTTACAGGCAGATTTTAAAACTCATCGGGCCCCCAGCGGATTATTTACACCGCCGAAATGCACACTATGCTCTTTGTAATCAAGTTCCAAATCGTGTGGCCGTGTGAGGAAACGAAGCGTCTGACGTCACTGGTCACGTGTTTGTGGCGGAACGAATCAAATACGATATAGAGGTTAGCAGTAAAGTGCCTGTTTGACAGTCATGTGTTGTGGAATTTGTTAGGTGACAGATGTTTGCATAGATACAACCTAAGTTACAGTAATCTGCAACTTCTAAAAAGATTCAAAGTTATACCAACGTGGATGTCCGTCAGTctggttgtttctttattaCGGAAATATAAGCATACGCCGGTTTGACAGTTATTCATTATTTACGGTGCTGTGAGATTCACGTTAGCATTCCAGCGGATAGAGATGTCTGAGAGCGGAGGCAGCTGTCGGGGCTGGGACTGGAGTAGTCCAGAGTGTCGTGCCCGGATGGATGAGATCTTTTTTCGCCAGCACGACTACATTCAGGCGAAAAGTATTGAACACAAGGAGTTTTGGGCTTTCTTTGAGCGCTTTCAGCGGTTTAAAGCCAAAAAGGAGATGGCGGGCTCAAAACCCAGCAAAAGTATGGCAGAGTTACGGAAGAAACGTGCAAGTGGCACAGTGGATCTTGGGCTCCCAAAGGAATATGATGCACGATACAGGATCAACATCTTTGTAAACACCAGAGACGTGGAGGATCGTCTCGGAGGCTTCCATGGCAGGCGACCCAGGGACAAGCCGAACGACCCAAGCAGCCAGGAGGTCACAGACTGTCGCCTTGCCCTGCTTCATTTTCTAGACTTCACTCAGAAGCAGAGCTTCTGTAAACTCCTCAAGCTGCAGCGTGAGCAGAAGAGCCTGCCCATCTATCATTACCGTGACCGGATTGTGGAGCTGGTCCAAACCCATCcggtggtggtggtggctgGAGACACTGGCTGTGGGAAGTCCACACAGGTGCCCCAGTACCTGTTGGCGTCTGGCTTTAACCATATAGCCTGTACTCAGCCTCGCCGCATTGCCTGCATTTCCCTAGCTAAGAGAGTGAGCGTTGAGAGCCTCAACCAGTATGGTTCCAAGGTTGGCTACCAGATCCGCTTTGAGAGCAGGCGCACATCAGGCACTAAACTCCTGTTCCTGACTGAGGGTCTGCTCCTCAAGCAGATACAACATGACGCTATGTTGTCCCAGTACCATGTGGTGATTGTAGATGAGGTTCATGAAAGACACCTGCACTGTGACTTCCTGTTGGGTGTGCTGCACTCCTTGCTTCGCAAGCGGCCAGACCTGCGCTTAGTTCTTATGTCTGCCACCATCAACATCAAACTCTTCTCCAGCTACTTCAGCAATGCACCTGTGCTGCAAGTGCCAGGTAGACTCTTCCCCATTCAGGTGATATACCAGCCCATCTCTCAAAAGGAACAAGTGTCCCAAATGGAGAAGCTGGATCCAAGACCATACCTGCGTGTGCTGCAGGGCATTGACCAGCGCTATCCCCCTGAGGAGCGGGGCGATCTGCTGATTTTCCTTAGTGGTTTAGCTGAAATCTCCACTATCATGGAGGCATGCCAAACCTACGCTGCACACACGAGTCGCTGGATCGTACTGCCGCTGCACAGTACCTTGTCACTGGCACAGCAGAATAAGGTCTTTGACGTTGCTCCCCCAGGGTTGAGAAAATGCATCATTTCCACCAACATAGCTGAAACCTCAGTGACCATTGATGGGGTGCGCTTTGTAGTCGACTCAGGTAAAGTAAAGGAAATGACCTTCGACCCAAAGGCCAAGATGCAGAGACTTCAGGAGTTCTGGATTAGTCGTGCCAGTTCTGAGCAGAGGAAAGGTCGTGCAGGTCGAACAGGGCCAGGAGTTTGCTACCGGCTCTATGCTGAGTCAGACTATGAGGCCTTTGCCCCTTACCCTGTTCCCGAGATCCATCGAGTGGCTCTAGACTTGTTAGTGCTACAGATGAAGAGTATGGGTCTGGGAGATCCTTGTTCTTTTAACTTCATAGACCCTCCTGCAGCCTTTAGCATTCAGACATCTGTGAGGTATCTAAAAGAACAAGGGGCACTAGACGCTCAGGGAGAGCTCACCCCCATGGGCAATCTGCTGGCCAAGCTCCCTGTGGATGTGGTTATTGgTAAAATGCTAGTTTTAGGTTCATTATTCAACCTGGTGGAGCCAGTGTTGACTGTAGCTGCAGCACTGAGTGTTCAGTCACCATTTCTGCGCAGTACTCAGCACAACCCAGATTGTGCCACTGCACGCCAACCCTTGGAAAGTGACCTGGGAGACCCCTTCACCCTGCTCAATACCTTTAATGCATGGGTACAGGTGAAAGGGGATAGGGGAGGAGGCTCCAGGAAGTGGTGCAAAAGAAGAGGACTAGAGGAGCAGAGACTGTATGAGATGGCCAACCTGAGACGACAGTTCAAGGAGCTGTTGAGGAGTCATGGCCTGGTGGAGCCTGAGGCGGGCTACATAGCTGAGGACCAGGCCCAGCGGAGGAAGAGGCTGACTGAACGTCAGAGACTGCACCAGCTGAAGAGGGAGCATGAGTTAATGGAGAACAGCCACAGGAAAGTGTTGCGTCTGGAGGAAGGCCTGGAGCAAGGGTTGTCGTCTGACTCAGATGAGGAGGCAGCAGGGTCAAGCAAGATGGACAAAGACTCTGTAGCACAGGATGTGGACATACAGGAAGTGAAGTTCAAACTGCGGCATGATGTTAGCAAGCTTCAGGGAGATGCATACGCCAGTGCAGCGCTGTCGTCTCGGCAACAGGCTCTTTTCAGACTGGTGCTGTGCCGTGGCCTATACCCACAGCTGGCCCTGCCTGATGAACATAACTCTGCCCGCAAAGATTCCgagcaggTGTTTCACACTCGTAACAAGCAAGGTGTTGTGATTCACCCCACCAGTGTTTTTGCCAGTAATTCGGATTTGCTGCACATCACTCAGTATGAGTCCAGTGCTGAAAAGGGGCAGAGTAATGGGCATCAGTTGCTGGCTTTTGTAACTCTGCTTGAAACTAACAAGCCTTATGTGTCAAACTGTGTACGGGTCCCTGCCCTACAGGTTTTGCTGCTGGTGGCAAACTCTATAGACAGCAATGCAGACTGCACACGGCTGGTGGTGGATGGCTGGCTGGAGCTGGTTATAAGTGATAGTGTGGCAGCTCTCAAAGTGCTGTCCTCTGCCCTCATGATGAGAGACAGTTGGGACAGTCTGCTACAGGCCAAGTTGAGCCAGTCGGGTTTGAGATCTAATGCGGTTCTGGGTTTTGCTGGCCCAATACCAACCCATCATGGGTTAGAGAAAGTCACAGCTGAACTCGTACGCTTTCTACTGTATACTGAGGTGAGTTACAGTCTGAGAAGGCTTACCCCACTGCAGTCTCAGAACCTGTACATTGGACCTCAGCTGAACATGGAGGTTTCCCTCCCCCCTCTCTTCcctgaaatgaaaactgaaccTGATTCAATTAAAGGAGGTCTACATGTCACCAGCTACTTCACCTATAATTGCCTCTGTGACTCCAAAGACTTGTACAGTGAGTGTTTACGGACATTTTGGACATGCCCTCACTGTGACCTGCACATGCCCTTCACACCACTGGAGCAAATGCAGCATGAGGCCACCTGTAGACCACTAGAGGAACAGCAGACTAAGGAGGAGCCTGACACAGTAAAATCTGGATTCTCGTCTAATCTGACTAGACTCTACCACTGTAATATCTGTAAGAAAGACTTAACCCTAACCTCCACCGAGATACTTAAACACAAGCGTCAACACCAGTCCTGAGTTCTTCCTGCCACTGTGCACAGAACTAACTCAGTACCAGatggagttatactgtatatttttttctttttgaagaaGAAATTTGTGAAAGATTCTTGTAAAAATAGgtatgtgtgtttctgaaaCATATAGATATGTGTATGTAAAAATAGGTATGTGTATTAggtatgtgtatttgtgaagCATAATCCtctccatttcatttttatactataaataaaatggtctggtAATTTCTTGATCAA

Function

symbol description
dhx34 Predicted to enable RNA binding activity. Involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human DHX34 (DExH-box helicase 34).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K20101 DHX34; ATP-dependent RNA helicase DHX34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913714.2 True 4270 mRNA 0.49 16 19309888 19333430

Neighbor

gene id symbol gene type direction distance location
znf710a znf710 coding downstream 568164 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 785662 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1584568 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1831603 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 2001986 17088641 ~ 17307902 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 73620 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 717902 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 881712 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1028900 20362330 ~ 20377332 (-)
ccnp NA coding upstream 1049380 20382810 ~ 20389633 (-)
G101846 NA non-coding downstream 10526 19298891 ~ 19299362 (-)
G101809 NA non-coding downstream 56525 19252853 ~ 19253363 (-)
G101805 NA non-coding downstream 68739 19240171 ~ 19241149 (-)
G101750 NA non-coding downstream 182529 19126638 ~ 19127359 (-)
G101749 NA non-coding downstream 184448 19123917 ~ 19125440 (-)
LOC113527011 NA non-coding upstream 17332 19350762 ~ 19350943 (-)
G101865 NA non-coding upstream 27362 19360792 ~ 19361008 (-)
LOC113526920 NA non-coding upstream 29142 19362572 ~ 19363809 (-)
G101932 NA non-coding upstream 61641 19395071 ~ 19395304 (-)
G101938 NA non-coding upstream 157099 19490529 ~ 19491255 (-)
G101178 NA other downstream 1113082 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3952325 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4962880 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5747314 13550680 ~ 13562574 (-)
G98770 NA other downstream 6257577 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 646639 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1062436 20395866 ~ 20416574 (-)
G102566 NA other upstream 1620172 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1661911 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2898018 22231448 ~ 22306769 (-)

Expression


Co-expression Network