mthfsd (mthfsd)


Basic Information

Item Value
gene id mthfsd
gene name mthfsd
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28215787 ~ 28223504 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913719.2
TGACCCGGAAGTGCGCTTTGTTTTGATAGGCAGCAGCTGCTGGTGTCAGTGTGCAGTTATGAACCAGGGAGATGCTGCATGCAGGAGTCTGCTCAGTTCACTGTCATCGCCATTTAAAGcgttttaaagttaataaactATGGAACCCATTATAATTATTGCTAAAGAGGCGACTAAATGGGACATTCGCCAGAAAGTGTGGGATTACATGGAGACTAAAGACCTGGCAAACTTTCCCCGACCTGTGCACCACAGAATCCCAAACTTCAAGGGAGCTCAGGGGGTGTGCGGGAAGATGGTGGGCATTGAGTTCTTCACCAAATGCAATGAAGTCAAAGTGGATCCTGATAAACCCCTGGAAGGGGCTCGATTAGCAGCTCTGCAGGCTGGAAAAACACTGCTGGTCCCGACACCTCGTCTACGGACAGGACTGTTTAACAAAATCATTCCTCCACCAAGAGCCACCAAGGAGGATCTGCGAGTGTGCTCTACATCCCAgGGTGTGAAGGAGTTCAGTGTCCCAGTGGGTTTAGATTCAAGAGTTCACGTGGACTTGATAGTGGTCGGATCTGTTGCCGTATCTGAGAAAGgttacAGAATTGGGAAAGGTGAAGGATTTTCAGACATGGAATATGCCATGATGGTCTCAATGGGAGCTGTGAATGAATCCACAGTGGTTGTGACTGTTGTCCATGACTGCCAGGTTGTGGATATTCCAGAGGGACTGACGGAAAGTCACGATCTCACCGTGGACTACATCCTCACACCAAGCAGGATCATCAAGACTGAGTGTAAGATCCCCAAACCACAGGGCATCATCTGGTCAAAGCTAGATGCAGAAATGCTGGAGAAAATTCCCATCCTGAAAAAACTACGAGCCTTGGAGCAGAAGGCTGGAAAGGACGTAACGCTGAAAGTGTCCTCTGCTGAAAGTGTGAAGACAAAACAGGAGCATAAACCCAAACCCGAGCCCGAGGCCAGTCCTGATCCAAAACATGACCTGAGGCATGATCCTAAAATCCCAAGGCAAGATTGTACACTTGCGCTTATCGGTTCAGGTGAAGAAGCTGATGTGAAGAGTGAACGTTCTCAGGCTCCTGTAAAGACACTTTATTTAGGCAGCCTCCCGGCTGGATTGCGGGTGAGCGAGCTGAAGGGTTTCCTGAGGGAGCGGGACGCTGTACCTGCTAGGCTCAGCTGGCAGGGGGCACAACGCAGGGCGTTCCTCGAGTATGGTGACGAGCGAGCCTCAGATCAGGCTCTGGATGCCCTGCAGGGGCTCTGCATTAAGGGCCACACTCTGCATGTAGAGCGAGCCAAAAGCCAAAAGAGCTTCCACAGACCTGGTGCTACCAAAGACCAAGCAAGAATGAACCCAAAGGAACAGCTCAGACTACAACATCCACCGCAGCCACCATCAGCAGTGTCCCAGAGGACAGGTTGGAGATAAAATCCAGAAAAGGTGTCAGAAGAGGTGTGAGATTTCAGTGGGAGAAGAACATTGATAGATGCTCTTACAAAACAATTGTTCCTGGAATTAAAATTCAGAAATCCTTATGATCCTTATCATGTTTTAACAATGGTTATTAAAGGTGCGCtttgttaatgtttaaaaaaaaaaaatactgtaataatcatataatttcagAATTAAAGTAAGCAATGAAA
>XM_026913720.2
GCTGACCCGGAAGTGCGCTTTGTTTTGATAGGCAGCAGCTGCTGGTGTCAGTGTGCAGTTATGAACCAGGGAGATGCTGCATGCAGGAGTCTGCTCAGTTCACTGTCATCGCCATTTAAAGcgttttaaagttaataaactATGGAACCCATTATAATTATTGCTAAAGAGGCGACTAAATGGGACATTCGCCAGAAAGTGTGGGATTACATGGAGACTAAAGACCTGGCAAACTTTCCCCGACCTGTGCACCACAGAATCCCAAACTTCAAGGCTGCTACAGCGGCCTGCGACAGGCTTCCTGTCCTGCAGGAGTTCCAGTCCAGCAGCGTTGTCAAAGTGAACCCGGATAAGCCACAGGAGCGAGCTCGCTTTCACACTCTGCATGCTGGAAAAACACTGCTGGTCCCGACACCTCGTCTACGGACAGGACTGTTTAACAAAATCATTCCTCCACCAAGAGCCACCAAGGAGGATCTGCGAGTGTGCTCTACATCCCAgGGTGTGAAGGAGTTCAGTGTCCCAGTGGGTTTAGATTCAAGAGTTCACGTGGACTTGATAGTGGTCGGATCTGTTGCCGTATCTGAGAAAGgttacAGAATTGGGAAAGGTGAAGGATTTTCAGACATGGAATATGCCATGATGGTCTCAATGGGAGCTGTGAATGAATCCACAGTGGTTGTGACTGTTGTCCATGACTGCCAGGTTGTGGATATTCCAGAGGGACTGACGGAAAGTCACGATCTCACCGTGGACTACATCCTCACACCAAGCAGGATCATCAAGACTGAGTGTAAGATCCCCAAACCACAGGGCATCATCTGGTCAAAGCTAGATGCAGAAATGCTGGAGAAAATTCCCATCCTGAAAAAACTACGAGCCTTGGAGCAGAAGGCTGGAAAGGACGTAACGCTGAAAGTGTCCTCTGCTGAAAGTGTGAAGACAAAACAGGAGCATAAACCCAAACCCGAGCCCGAGGCCAGTCCTGATCCAAAACATGACCTGAGGCATGATCCTAAAATCCCAAGGCAAGATTGTACACTTGCGCTTATCGGTTCAGGTGAAGAAGCTGATGTGAAGAGTGAACGTTCTCAGGCTCCTGTAAAGACACTTTATTTAGGCAGCCTCCCGGCTGGATTGCGGGTGAGCGAGCTGAAGGGTTTCCTGAGGGAGCGGGACGCTGTACCTGCTAGGCTCAGCTGGCAGGGGGCACAACGCAGGGCGTTCCTCGAGTATGGTGACGAGCGAGCCTCAGATCAGGCTCTGGATGCCCTGCAGGGGCTCTGCATTAAGGGCCACACTCTGCATGTAGAGCGAGCCAAAAGCCAAAAGAGCTTCCACAGACCTGGTGCTACCAAAGACCAAGCAAGAATGAACCCAAAGGAACAGCTCAGACTACAACATCCACCGCAGCCACCATCAGCAGTGTCCCAGAGGACAGGTTGGAGATAAAATCCAGAAAAGGTGTCAGAAGAGGTGTGAGATTTCAGTGGGAGAAGAACATTGATAGATGCTCTTACAAAACAATTGTTCCTGGAATTAAAATTCAGAAATCCTTATGATCCTTATCATGTTTTAACAATGGTTATTAAAGGTGCGCtttgttaatgtttaaaaaaaaaaaatactgtaataatcatataatttcagAATTAAAGTAAGCAATGAAA

Function

symbol description
mthfsd Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MTHFSD (methenyltetrahydrofolate synthetase domain containing).

NR:

description
PREDICTED: methenyltetrahydrofolate synthase domain-containing protein isoform X1

GO: NA

KEGG:

id description
K24991 MTHFSD; methenyltetrahydrofolate synthase domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913719.2 False 1668 mRNA 0.48 8 28215789 28223504
XM_026913720.2 True 1670 mRNA 0.48 8 28215787 28223504

Neighbor

gene id symbol gene type direction distance location
gas8 gas8,LOC108276428 coding upstream 705 28206753 ~ 28215082 (+)
LOC113526563 LOC108264624 coding upstream 34584 28163685 ~ 28181203 (+)
LOC113526844 tubb3,tbb3,LOC108431516,LOC107552791 coding upstream 74055 28133842 ~ 28141732 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding upstream 91867 28119024 ~ 28123920 (+)
tcf25 tcf25,LOC106562269 coding upstream 100826 28098396 ~ 28114961 (+)
emc8 emc8,LOC106587369 coding downstream 229556 28453060 ~ 28460177 (+)
gins2 gins2,psf2 coding downstream 238325 28461829 ~ 28467750 (+)
cibar2 fam92b,LOC108442585 coding downstream 518531 28742035 ~ 28750741 (+)
si:ch73-103b9.2 c4h16orf46 coding downstream 550817 28774321 ~ 28778017 (+)
LOC117597519 NA coding downstream 1296943 29520447 ~ 29550296 (+)
G106343 NA non-coding upstream 117786 28097729 ~ 28098001 (+)
G106118 NA non-coding upstream 486626 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 613053 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 717157 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 981563 27229784 ~ 27234224 (+)
LOC117597547 NA non-coding downstream 10303 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 166694 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 206499 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 345966 28569470 ~ 28571760 (+)
G106527 NA non-coding downstream 349175 28572679 ~ 28573466 (+)
def8 def8 other upstream 53918 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 145102 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 249479 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 670261 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 1001217 27211389 ~ 27214570 (+)
cmc2 cmc2,LOC107711752 other downstream 575960 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2170756 30394260 ~ 30498315 (+)

Expression


Co-expression Network