LOC113526563 (LOC108264624)


Basic Information

Item Value
gene id LOC113526563
gene name LOC108264624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28163685 ~ 28181203 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913727.2
CGCGGGCGCCCCGCTCCTGCTGTTTACTCGAGTCAGCTGCTTTTATCTCTTTTCAGTTTCCTCGTAGTTTCGAGGAAACTTTCTGCTGCAGCTGGAAAATGAGTCGGATATTGCGGCTGATGTGTGCAGACTGCTGTAAGTCAGGATGGGAGAGTTGGAGAAGAGGATACAGCGCGTTTAACTGTCATTCAGCCGCAGTGTTAAAGTTCAGGAATTTTTCATTGCATCGAGTGAAATTAAGATTAGGATCCAATGAATCGCTGCTGTCACAGTCACGTGTCTTCTCCAGCAAACCACCAAAAGGATTTGAGAAGTTCTTTCCAAAGAGATCAACAGCAGAACCCAGAGAGAAATCCAGTGACCCGGCATCCCAAAGACGAAGAGGTGGAGCAGGAACAGGTGGTGGCGAGAAGAAGGAAGATGGCAGTTGGTGGTCTCGCATCCTACGAAGAGACGTCCCGTGGGATGAGAAGCATTTCTGGAACGTCCTCTTTGCAGGAGCTGGGATGCTGGtgacttttctttatttacactTCAGAGATGAAGGAAGAGAGATATCATGGAGGGAGTTTGTTAATTACTACCTCGCTCGAGGCCTGGTCGAGAGGCTGGAAGTGGTTAATAAACAGTATGTCAGAGCGCTTCCTGCTCCCGACGTCAACACAGCAGAAGTGAGTTATGTTTGGTTTAACATCGGTACCGTGGACACATTTGAGAGGAATTTGGAGCAAGCAGAACAAGAGCTGGGTTTGGAGGATTCACACAAGCTGCCGGTGCTGTACAGCACTGAGAGAGATTGGTCGTTCCTCGTGATTTTACTCCCGCTCGTTGCGCTGCTTGGTTTGCTCATGTTCAGCTCGAAGCAGTGGAAGCCTGGAGGATGGCAGTACAGGAGAGGAAACAATATCTTTAGGATGACTGAGTCCAAAGCTAAGATGATCAGAGACAGCATTAACGTCAGGCTGAAGGATGTTGCTGGCTGTGAAGAGGCCAAGCTGGAGATTTTGGAGTTTGTCAACTTCCTGAAGAAGCCCAAACAGTACCAGGAACTTGGTGCCAAAATCCCAAAGGGCGCAGTGTTATCAGGTCCACCTGGCACAGGAAAGACCCTGCTGGCCAAAGCGACTGCTGGTGAAGCTGGAGTTCCCTTCATAACAGTCAACGGCTCAGAGTTTCAGGAGATGTTCGTCGGTGTTGGAGCAGCCCGGGTGAGGGACACCTTCGCGCTGGCCAGAAGACACGCCCCCTGTATCCTCTTTATTGATGAGATCGATGCAATGGGCAGGAAGAGGGGCCGAGGGCACTTTGGTGGGCAGAGTGAGCAGGAGAACACACTTAACCAGCTGCTGGTGGAAATGGATGGCTTTAACAGCAGCACTAACGTCGTGGTTCTGGCTGCCACTAACCGTGTCGATGTTTTAGATCCGGCACTTTTGAGACCTGGACGATTCGACAGGCATATTTACATAGGACCGCCTGATATTAAAGGCAGGGCTTCGATCTTTAAAGTGCACATGAGGCCACTGAAGCTGGATTCCAGTTTGACCTCAGATAATTTGGCGAGAAAGCTGGCTGCTCTCACACCTGGCTTCACAGGGGCTGATATTGCGAACGTCTGTAATGAAGCAGCTCTCATCGCCGCACGGCACCTCAGCCCAGCTGTGACCTCCAGACACTTTGAGCAGGCTGTAGAGAGGGTGATCGGAGGTCTGGAAAAGAAGACGAGGATTCTGCAGCCTGCTGAGAAAACCACTGTAGCTTACCACGAGGCCGGCCACGCTGTCGTAGGCTGGTTTCTGGAGCACGCTGACCCTCTGCTGAAGTTGTCCATCATTCCTCGAGGTAAAGGCCTGGGCTATGCGCAGTACCAGCCGAAGGAGCAGTACCTGTTCACGCGCGAGCAGCTCTTTGACAGGATGTGTGTGATGCTCGGAGGGCGTGTGGCGGAGCAGGTGTTTTTTGGCAGGATCACCACGGGCGCTCAGGACGATCTGAGAAAAGTCACACAGTCTGCGTATGCTCAGATCACGCAGTTTGGGATGAGTGAGTCAGTGGGTCAGATGACGTTTGATTTGCCGCAGCAGGGTGAGCTAGTGTTGGAGAAGCCTTACAGTGAGGCCACTGCTGAGCTCATAGATCAGGAAGTGcgttctctcatcagcaaggcctTCGAGAGAACACACCAACTCATCACCGAGAAACGAGAGCTGGTGGAGAAGGTGGGGAAGCGTCTCCTGAAGAACGAAGTTCTGGACAAAGCAGACATGGTGGAACTGCTGGGCCCGAGGCCGTTTGCAGAGAAATGCACCTACGAGGAGTTTGTGGAGGGGACTGGCAGCGTTGACGAGGACACGAGTCTGCCTGAGGGCCTGAAGGACTGGGACAAGGAGAGCGACACGTCTCAGCATAATGGCTCCTCACAGCAGCACAAAGAGTTTATATACCTGTAGCATGGACTGAGCTCTGTGGAGCtggaaatgacaaaaatgagtGTTGGAGCAGTCGGAGGATCCCAGCTGAGGGcaatgatttcattttaaaggcatttttaaggtttttgcTTTGATTTTCTACCTTAGGGACTATGCTAAGAAGTGTTTCCCTGACTGAGACAAGGACCTGAGAAGGAGGCCCAAGCTGAAACGTCAAGGCATCAACGAAGACACGGGGATTGGGATCCTGTCAGAGCCTGCACGGGGAATCTTTACCTTCATGTGGTCAAGAAGGTGAAGATCTCAAAGCAAAGAGTGACcaccatttaaaaacaaatgaagtttaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: AFG3-like protein 1

GO: NA

KEGG:

id description
K03798 ftsH, hflB; cell division protease FtsH

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913727.2 True 2792 mRNA 0.51 16 28163685 28181203

Neighbor

gene id symbol gene type direction distance location
LOC113526844 tubb3,tbb3,LOC108431516,LOC107552791 coding upstream 21953 28133842 ~ 28141732 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding upstream 39765 28119024 ~ 28123920 (+)
tcf25 tcf25,LOC106562269 coding upstream 48724 28098396 ~ 28114961 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding upstream 67859 28089378 ~ 28095826 (+)
mvda mvd,LOC106562275 coding upstream 75260 28080997 ~ 28088425 (+)
gas8 gas8,LOC108276428 coding downstream 25550 28206753 ~ 28215082 (+)
mthfsd mthfsd coding downstream 34584 28215787 ~ 28223504 (+)
emc8 emc8,LOC106587369 coding downstream 271857 28453060 ~ 28460177 (+)
gins2 gins2,psf2 coding downstream 280626 28461829 ~ 28467750 (+)
cibar2 fam92b,LOC108442585 coding downstream 560832 28742035 ~ 28750741 (+)
G106343 NA non-coding upstream 65684 28097729 ~ 28098001 (+)
G106118 NA non-coding upstream 434524 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 560951 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 665055 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 929461 27229784 ~ 27234224 (+)
LOC117597547 NA non-coding downstream 52604 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 208995 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 248800 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 388267 28569470 ~ 28571760 (+)
G106527 NA non-coding downstream 391476 28572679 ~ 28573466 (+)
def8 def8 other upstream 1816 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 93000 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 197377 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 618159 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 949115 27211389 ~ 27214570 (+)
cmc2 cmc2,LOC107711752 other downstream 618261 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2213057 30394260 ~ 30498315 (+)

Expression


Co-expression Network