nectin1b (nectin1)


Basic Information

Item Value
gene id nectin1b
gene name nectin1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20215142 ~ 20292323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913745.2
AGATTCGGATCTCAAGCTCGCGCTGTCCGCTACATCAGTTCAGGTGATCCAGCTTCATCTGAATCATTCTGTTCcgcttttcttttcttgagAAAACCTTCTTGGAAAAAGAGCAGGACGCAGTTTTGTGCTGACATTCGCAGACAATCTCAAAAGAAGCTTATAATCCCTGTTTCCCTAAACAAGGGTACAAAAAAAAGGGATTCTCAGAAGTTCGCGCGTAGCCTACTATTGGGCAGGAAAGAGGAGACAGAAAGGCCTGTTTCAGTGCCGGAAAACAGGGACCTGGGGTTCAGAGGCACTGACGCATCTAGAGCGACTTGTTAAGGTGGACTGGATCCGTCTCCTTTTCTATCCTGGCACACCAGAGAGCCAGAGGAAGAGCAAAGCGGCAACTGTCTAGCAGGACCTCCTGAGCTAACAGTTGCGATCTGTTTGAATTCTGTATCTCTCCTGGACTTATCAAGTTGGCGATCCAGGCGAAGCTACATGTGGTGTTGATTAGCGGGGCTTTGTGGCGAGCCCATAGCACAGGGAGTCGTACTGCAGGCGCTGGAAAGGCGCTTCAAAGTGTGTGGCTTTGTAACAAATATTTATTCCGCTCAACTGATCATCAGCCGGAGCTGAACTTGGTGTATTATCCTCAAGTCCACAGGATTTTCAGTGCACGGCTTACACCATGGCAATGCAGGCCAGTTCATGGATCCTCTTACTGGTTCTCATGAGAACACCAGTGGGGAATGGGCAGTCTGTGCAGATGGACCCAGAGATATCTGGCTTTGTGGGTTCAACAGTGGAGCTCAGCTGCCGCTTCATCAACAGCAAGCCCCCGGTGAAGATCTCGCAGGTCACCTGGCAGAAGTCCTTCAATGGCACCAAGCAGAATGTGGCCATCGCCAACCCAGCGTTAGGTGTCTCCGTGCTCCCTGCTTTTAAAGACCGTGTTACCTTCAAGCACCTGTCCATGCCACATGCAAATCCCTCACTTGAGGACACCACGATTGTTTTCAGCAATCTGCGCCTTTCAGATGAGGCTGCCTACATCTGCGAGTACACCACCTTCCCAGCAGGCAACAGGGAAAACATGGTCAACCTCACTGTCTACGcaCGTCCCACGACACATATGACCCTTACAACTCCCATCATCATCGCACGGGCCCAGAAGCACAAGATGACAGTTGCCACATGTCTGTCAGCAAACGGAAAGCCATCCAGTGTGATTAAGTGGGATACCAAGCTAAAGGGCCAAGCCACATTCCAGGAAACACGCAACCCCAATGGCACAGTCACTATACGCAGCAACTATGTGATTGTGCCAAGTCGTGAGAGTCACCGCCAGAAACTCACATGCATTGTCACCTACAATACTGAGCACTTCAGCGACAGTGTCATCCTCAATGTTCAGTATGAACCAGAGGTAAAGATTGAAGGTTTTGACGGGAATTGGTACCTGAACCGTCAGAATGTGAAACTCACCTGTGATGCAGATGCAAATCCAGCTGTCACTGGCTACCATTGGAAACTATTGAATGGATCCCTGCCCAAAAACGTGGAAATCAGAAACAACACTCTGCTCTTCAGGGGGCCCGTGACATATGACTTCAGTGGCACATATATATGTGATGCCACCAACAGCATCGGCACTCGATCTGGCCTAGTAGAGGTCAATGTGACAGAATTCCCCAACCATATCCTTCGAGGCGGCGGTGACAATGACCAGAAGCAACCCAGTACCAATGCTGCAATATGGGGTGGTGTGGGTGGCCTGGTTGTACTGATCATTGGTGTTGCATTGCTCATCTACTTCCTGCGGCGTCGGCAGCGCACCTTCAAAGGCGACTACAGCACCAAGAAGCATGTTTTTGGTAATGGCTACAGTAAGGCGGGCTCTGTGCCTGCTCATCCCTCTGTGCCCAAGAACCTGCAGTACCCAGATGACTCAGACGATGAGAAGAAGGCCTCTCAGATTGGGGGGCCAGGGGCCTTCGAGGGCACAGAACGTGATTTCGATGGTAACTCTGAAGACCTAAAGAGACCCTATTTCACTGTGGATGAAGGTGAGAGCCATGATTACGATGAGCGGACTCTCGCCTTCCAGTATGAGCCCGAGTCTGAGATTGCAGATGACATGGTATCCCAAACTGATGGCTCTGTCATTTCAAAGAAAGAGTGGTATGTGTAGTGTAGCAACAAATAATGAGATCAACATTAGTCTGCTCTTACCTGCATTCTACCACACCCCTTCATCTCCATCACTAGAAGCCTTCTACCCATCCTGCTCTTCATCCCACCCCTCACTTCTCCATGCCAGCAACCTCTGCCCCcatcaaaaacacatttaattgaacatgaacatgaaaaaaagcTTGGAGCGTTGACAAATCAACACATATTTCCACACGCTAATAGCTTAACCTGGTACAGCAGTGAAAACAGGCGTGAACTTTCACTCATGCCAATCGCCATTGACTCCTAAAGCTGTACAGGCTAGTTGCTTGAAACTTTTATggtgtgttattattaatataatttgtcTCATTTTGTTGATATTACTATCagtgtattaaatgtattaaaaagagACTTTGTAATGAATGAGTTCTCACCCATCTTGTGAAAGTCCTACACTGgatgtattatattttttaatatcttttcatatatgatcttttttttttttgtaaagtctTTCCTCTTTATGGGGTGTTGGTTTTCTGAAAATGGTGAGATTATGTATAAATGGATAGTTGTGAGGCATTTGGTCAGTTGCTTCAGACTGAAATTAAGTGATGGTTTAAGGATGTTTTAAATCTTAAGGAAGAAAGCACACACGTTCCTCATGACACCTCATGATTCATGAGAGTGCTATTACAGAGGAGTGTAATCTCTTGCTATCTTTCTCCCATTATTTATCTCTGTTGACATTATTGGGTATTTTAATACTTTGACAAGGTACATTTCACTATGTTACACTAAACGATATAAATGTACTATGGACTTTTATTGGAGTATCaggtttttgtcttttttttggttgtttggtGGCATGGGGTAATCATTTGTAGAGATGGAACATGTTTGTCActgtacatattaaaaataGGGCTTAATATGTTATGGTAACATTTTGTGACATGTGTTTATATGATTGTACTCCATCATCGCACATGATGACTCCTTCTGATCATTCGGGTGGCCACAGTGACATGGAACTTGAAAGCTAAAGCTTTCGGAAAGATGGCATTTTGACAATTCAATGTCAAAATGAGCTTATCTGCACTTGAACTTAAATCATATGCTTAAAGGTTTGTCCATCCTTCTTGTTTTggtaatttcttcattttttatttaggaTCACAGCAAACAAGGCAAAGGCAACTGTGTCCTGCCAAAAATATTGACACTACAGATTTATATAAACCTGCAGTGCAACATACCTCTTGAGAATCTAAACCATTGACtgtgttttgcagtgttttttccTACCACCTTTCATACAAATAGGGAAAATTATTgttggtaaaaaataaaaatctacaaaaaaaaaataaaaatcatgagAAAGTCAACAGGTAATCAGTCACcataactagctagctgaaAAGATGCAAATGGTTCTTATtttaatgtatgtatttttttctcctacaggtatgtacaggtgtgtgcatgtacttgtgtttatcagttttttttatgtcttcaACATATTTTATCTAATATTCTGTTTTGTTCGATTTATTGACTATGACAGTAGAACGCATTCCAGTCTGATGGGACATTGGGTTTTTGGATCTTAGGTCTTGTAAGTTggtgcatttttgttttctgagaGAAATAGCCTTTTTAGTCACCCAAAATCAATTTAAATCACAACCTGTGAATGAAATACTCAACTCCTCTACCTGGCTTAAATCACAGTGGGGAAGATTCATAATCTAAAACACAGGACCTTTTTGTAAGATATTGGAACCATAAATAAGTGCCACTTATTGGTATCACTGAACAAGGAGAAGCTGCGTGTGCAATTCTTAAACATTTTGGCAAAACTCCACATTGGGGTTACTTGGGGtaactgtttgtgtgttgctttctttttaaaaataaatgttgaaaaatagCTTACTAGTTGTGTAATATAATGTGCCAGACCATATTATGTCTGCGAGATGTAATAGTTCAGGGCCCTCAATGAAACATATCTGTGTTATATTTGGTTCCACCAACTTTCAGGATAAAtcttttcagaaaaatgtttacacTTGCAGCACAGAGTGGAGCggaatattttgttgtttttccttttagttcaagtgttagtgtgttgaaTTTACAAATcatgtaattattaaatatcaCCTTTGggaaaaacaacagaactgGAAAACTTAAGGATAATCCCAGCAGTGGGGAGTAAGATCGTGTTACTTTAGTTTGTAGCATTTAATTACTAGTTAATGTTTCACCATAGCACAAGCAAGCCTAGAGGACCTTTTCAAGATTAGCAAAAGGTAGAGATGTGAgcaggacagttttttttttaaataacattccTGCCTTCTCCCACAGGCACTCAGACCAATCATCTTTGCTCCCACAGAAATTTTAACCCTTTGCTTGTAAATACCCACAATTATTGTaatgaactaaaaataaaagagtaatttaaaccacagtgccCCTGACTAAgacaaagcagttactgaagatgactgtaTAAATTAATAACTGACGAAAGCCCAATTTACATCACACACGGTACATGCATTGTGTGAGCACTGTGCTGCATCCAGTGTGCTCCCATGTAAATCAACATAACCCTTCATTGTCCCTTGAGCTTATCTGACTGCTTGTTCCCAACCTCATGTCAGTAAAAAGCACCTGCTCCCACTACTTTTTGGGGGGGTCTCATGGGTCCTGCAGTATCCCAGTCCCGATGCACATCTCAGGCACTCCTCTTGAAGCACTGAATAGTTATAATGGCCTTCAAATATcaactgagagacagaaaatgagGATTCACAATAATATCCTTATATAAAGTTCTTAACAGTAATTGTTCTTGTTTTAAAATCATCTTAAATGCCTGATTTTCCATTGTAAATACAATATGTAACATTTGTGGAGCATCAGTTAAGTATGAACACCTTGAAATTCTTTCACCACaactgaatgaaagaaaaaagaaatggctCATACTTAGTAAATATGTTTGTTATTGTGGGAATTCTACTTTTAATGTTAATGGGTTCTATCTAAGGATATATCACATAGATATATATCAATTTGTAAatacctgcaaaaaaaaaaaaaaaaaaaaaaaaaagattacagaaAAGGATCTAGTCCCCATGCAGTCATgtgaatgtttgtatgtttgctGAGGTTGATTATTGTTCACATGCTGACCCAGTGAAGTAACCTGTATTTgtttcaaaacattaaatgattTCAATGTTCAATGA

Function

symbol description
nectin1 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of viral entry into host cell. Predicted to act upstream of or within several processes, including camera-type eye development; desmosome organization; and enamel mineralization. Located in adherens junction. Implicated in cleft lip; cleft lip-palate-ectodermal dysplasia syndrome; cleft palate; and ectodermal dysplasia.

NR:

description
PREDICTED: poliovirus receptor-related protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06081 NECTIN1, PVRL1, CD111; poliovirus receptor-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913745.2 True 5465 mRNA 0.41 6 20215142 20292323

Neighbor

gene id symbol gene type direction distance location
LOC113526513 cxcr5 coding downstream 160706 20051332 ~ 20054436 (-)
pik3c2a pik3c2a,LOC108264692 coding downstream 718149 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 881712 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1473418 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1690916 18282619 ~ 18524226 (-)
si:ch211-132b12.7 NA coding upstream 70007 20362330 ~ 20377332 (-)
ccnp NA coding upstream 90487 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 129950 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 168020 20460343 ~ 20464685 (-)
foxg1c NA coding upstream 178037 20470360 ~ 20471089 (-)
G102225 NA non-coding downstream 121340 20092984 ~ 20093802 (-)
G102224 NA non-coding downstream 122814 20089591 ~ 20092328 (-)
G102147 NA non-coding downstream 214819 20000101 ~ 20000323 (-)
G102146 NA non-coding downstream 215961 19998963 ~ 19999181 (-)
G102129 cdon non-coding downstream 247365 19943711 ~ 19967777 (-)
G102434 NA non-coding upstream 65892 20358215 ~ 20359541 (-)
G102444 NA non-coding upstream 179548 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 186010 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 201934 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 286367 20578690 ~ 20581168 (-)
LOC113527007 NA other downstream 234883 19980069 ~ 19980259 (-)
G101178 NA other downstream 2018336 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4857579 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5868134 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6652568 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 103543 20395866 ~ 20416574 (-)
G102566 NA other upstream 661279 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 703018 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1939125 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3298622 23590945 ~ 23610448 (-)

Expression


Co-expression Network