si:ch73-103b9.2 (c4h16orf46)


Basic Information

Item Value
gene id si:ch73-103b9.2
gene name c4h16orf46
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28774321 ~ 28778017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913746.2
atgttttattgcCAATAAAACAAGCGCGACTTTGTTTCCTAAAGATCACCAACTGCAACAAAATCATGAACTGAAAGTGAAGACGTCACGCTGTAGAATGCACTTACAGAAAGCCACGCCCCCACGTGGCCATCCTTTTCCGTTGCGTCACTGCGTCGTGCGCACAGCCGACCAGTCGCGTCCCTTTGATCGCCATAGCAACGGCACGTAACGCCGACTGCAGCCATGAACACACTGAGATAAATATTTCATCGCTTGTTAAACACCTCAGCCGCACGATGATGCTGCTTCTGAGCCAGGTTTAGCCACCTACACGGGTCAGGAATATCAGGAATACTCATCTGTCAATCAGGACGCATGGATGCTGATAAAACCACTGAGAGTTTGGAGAAGCCGGATTGCAGTGCGCCAGTGTGCAAGCTTTCCAAAGGATGTGTGGAGGTGCTGCTGGATATTAGCGAGGAAAACTCTGGGAAAGAGCAGGAAGCTTACGAGATTCCCAACCAAACAGGCTGGGATGAAGCTATCCAAGGTTGGGGTCAATGTTCCCCTTTTTCCTGTCTGTTTATAGCacaacaaaagagcaagaagCTCAAACCAGAGATCTCAGCCCCACATTGTGTTCTTTGCACTGATTTGAAGGACCTAAAGCTCTCAGAGCACTTCGTTCCCAGCCATGTTCCTTCAGAAGATTCCTACGACATATCTGAAGAGCCTCTGAGAAGCAACGTTCCACCATCTCTGGAACACCTAAACAGAACCCTAAGCGCCATTACTTCTACCTCATCCTCTGAAGAAGAACCATCTGATTTCACTCTTAAGGAGAGGAGCATCAGGAAAGACCTGCTCGGAAATAAACTGCTGTTTGGACCTGAACAGTACACACCTGACAAAAGTCTACCTCACCCACCTCAACCGGATGCTCCGTGCCTGTTTCTGAAAGATAAAAATGTTGGAAAAGTGGCACTGCTTGGTCGAGTTATGGTATTGCCACCGGTAAAAGTGCCAACAAATCCAAATGCTAATCCAAAGAGCTCGAATTTTTCAAAGAGGAGAGAGGATAGCGCCACAAGACCAGTTATCATTCCTGAGAAAGCTGGTGTTGATGGAGATCAAGAAAAAGCTGTGGTTATTTCTTATTCCAGCCCAACTGTAGGCACCTCCCAAGGATCTGTTACGTCCAAGCAAGGCCCAACGCAGCACCAGTATCACCTAATATCTGCTTTAAGCATCTCCAGAAGGTATCAGATTCCCATCAACACCTTGGCAGAGACTCAACCCAGTGCCACCTCTCTCCTGGAGCGAAATCTCAGACAGGAAGAGCTGATCAGATCACCTCTAAGGCACAACTCTGGGCACAGATCACGGTTAGGCCTCAAGGAGAAAAGTCTGAGAAGGGCAGAACCCGAGCTTCCGATGCTGATGGGGACCAGGGTCCAGATACCAGTGTCCACTCAGCGATTACTGTAGCtgctcactgtctctctgttttcacGCCTTCCAGAGGACAATAAAGATGACTATATGCTGAAATGACGATGCATGTTCTCATACTGAAAATAAGATTCATACCTCATACATATCATTACTTCAGAATGTGTTAGGTTTTTCCAGATGATCCTTTTTTCTATCAGAAacaacagaaatgattaaaatgtgtacGTTGTagtaaagaatgaaacactcggagttgtgctgttagaggaaaataatcaacaacacagtggcgtgatgaagctgagttacagttaccacgcTGAAGTTGAAcactttccaataacatcatgtCTTAAAGTGTCTTATTCCGTTTATACCtctgcaatttgccaacacttacattttttatttattaaagaacaaaacattgtatgttttatctgtttatagttacatttaatgttgtggaatgtccttgGAACAAGTTAGTTGCccttatcacttacgttatagcagctataaacagtctttccctcaacGCACTTCcttctcgaagttaataagaaacagtttgtcatgtttctgagaaaaCCGTGAAGCAcaaactcctttgtcctgaagatgtcagaaagctTTACCTCTTTACCTCAGCAAATTTCCCAGCTTTACCCCAGATTGTTACAAAAGCACATCTGTTTATGTTACAAATCCATTTATGAGGATACCTgctgtaagctgttactatagaaacgataacgtattagaaagagcacattaaacttttttttttcagattttgaaaaaaaaattgaaattttttttcagattttgaaaatgaattaacaccttctgacgaGTTAATAATTTAAGACTGATAATTTAAGATACTAATAGTAAACTAAAATTGTATTTCTGAATTGGATATAACTGTGTACTTTTATTCCACTAGCCCATaatgttttttcctcattcaggtctcctgctgtttcttttttgctaTTAGTCATGTCTTTTTATAGCTAATGGTCTATCTCTTGACTGCTCTCTGTGAACTGCTTGAGAGCTTGAGCCTTAAATGAAACTTGAAATATCAAAATGTTTACTGCGTTATGTCATTAGTTGCCTCAGTGAGGCctatttatgtacatttactGGAGAATGTCAACAGGGATGCAAACT

Function

NR:

description
PREDICTED: uncharacterized protein C16orf46 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913746.2 True 2616 mRNA 0.42 3 28774321 28778017

Neighbor

gene id symbol gene type direction distance location
cibar2 fam92b,LOC108442585 coding upstream 23580 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 306571 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 314144 28453060 ~ 28460177 (+)
mthfsd mthfsd coding upstream 550817 28215787 ~ 28223504 (+)
gas8 gas8,LOC108276428 coding upstream 559239 28206753 ~ 28215082 (+)
LOC117597519 NA coding downstream 742430 29520447 ~ 29550296 (+)
iqcg NA coding downstream 938576 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 1328676 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 1480051 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 1494527 30272544 ~ 30285534 (+)
G106688 NA non-coding upstream 49828 28724185 ~ 28724493 (+)
G106552 NA non-coding upstream 68969 28698428 ~ 28705352 (+)
G106571 NA non-coding upstream 126138 28647963 ~ 28648183 (+)
G106561 NA non-coding upstream 139955 28634158 ~ 28634366 (+)
G106555 NA non-coding upstream 145728 28623127 ~ 28628593 (+)
G106733 NA non-coding downstream 29415 28807432 ~ 28808212 (+)
G106788 NA non-coding downstream 101261 28879278 ~ 28879617 (+)
G106808 NA non-coding downstream 300211 29078228 ~ 29078598 (+)
G106867 NA non-coding downstream 366937 29144954 ~ 29145520 (+)
G107075 NA non-coding downstream 704217 29482234 ~ 29482464 (+)
def8 def8 other upstream 612452 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 703636 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 808013 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 1228795 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 1559751 27211389 ~ 27214570 (+)
cmc2 cmc2,LOC107711752 other downstream 21447 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 1616243 30394260 ~ 30498315 (+)

Expression


Co-expression Network