syt1b (syt1,LOC108264166,LOC108427563)


Basic Information

Item Value
gene id syt1b
gene name syt1,LOC108264166,LOC108427563
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30733459 ~ 30738572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913943.2
TTCATCACTGTAATCTTTTCCTCTTTGACTCCAGCAGTAATGCAGATCTGACCATCAGACTctgattaaatcattaaatcctGAGCTGAGACACTCACAGGGAAACAGAATGCATGAGAGTGATATGGATCCGGGATCTACCACACCTGTGCAGAAGCTAAATACCTCTGTGGCTCTCACACCTactgaagctccgcccactcagGCTCCACCCCAAAACTCACCTGGAGAACTAATGATCTCCACCAGAAACAAACTTCTGAATGAACTTCACAAAGTTCACTTTCCCTCCTGGGCTTTAGTGGCGCTGGGCTTCatcctgctcctcctcgctctcagctgctgcttctgcatCTGCAGGAAGTTTGTgtttaagaagaaaaaggagaaaccAGGGAAAGAGAAGAGCAGAAAGGACAGCATCGGCATGTCCACTGTGAGAGATGAAGGCATCACGCAGgttcCGCATCATGATCCCAAACCTCAGGAGAAACAGACGGAGAGTAAAGAGGACGTGAATCTGGGAAAACTTCACTTCAGTCTCGACTACAACTTCACTGACAGCACGCTCATTGTAGGAGTGATTCAGGCAGAAGATCTGGCTGCCATGGACATGAGCGGGACTTCAGACCCATACGTGAAGCTCTGTCTCCTCccagacaagaagaaaaaatttGAGACCAAAATCCACAGAAAGACTCTGAACCCCACCTTCAATGAGCGCTTCACTTTTAAGGTTCCGTACGCAGAGCTGGGAGGAAAGACTCTGCTCATGACCGTGTATGACTTTGATCGTTTCTCCAAACACGACGCCATTGGAGCTGTAAGGGTGCCGATGAACCGCGTCGATTTCAGTCATGTGACCGAGGAATGGCGAGAACTGCAGAAGGCGGAACACGAAGAGCAGGAGAAGTTAGGTGACGTCTGTCTGTCCCTGCGCTACGTCCCCACTGCCGGGAAACTCACCATCGTCATCCTGGAGGCCAAAAACCTCAAGAAAATGGATGTAGGCGGTCTCTCAGATCCTTATGTGAAGATCCATCTGATGCAGAACGGCAAaagactgaagaagaagaagacgacgataaagaaaaaaaccctgaatcCATATTACAACGAATCGTTCAGCTTTGAGGTTTCATCTGAACAAATTCAGAACGTTCAGATCATAGTGACCGTCCTGGACTATGATAAGATCGGTAAGAACGACACCATCGGGAAGATCCTGGTGGGAATGAAGAGCTCGGGGACGGAGCAGCGGCACTGGGAGGACATGCTGGCCAGTCCGAGGAGACCCATCGCTCAGTGGCACGCTCTCAGACCTGACGAAGAAGTGGACGCCGAGCTCAAAACGAAATGACGCTTCATATTCCAGTGAGAATCAGCAGGAGCGTGATCATTTATCTGTAACGCAAAGCTCAGCTCTGAATTTTATCCAAGTTTATTGCGTAgatttaatgattaatgaaatGTGACGAAGTCAGTGATGGAATTCTGTCGTTTCAGTCAGTCAGAGAaataagagtcgactcctaAACGACTCCCTGCTGTTCTGTTTTTCCCCAAAACTTGTTCATCTGTTGCTTAAATTGTTCAATAAAATCTTCC

Function

symbol description
syt1 Enables low-density lipoprotein particle receptor binding activity. Involved in positive regulation of dendrite extension. Located in cytoplasm.

NR:

description
PREDICTED: synaptotagmin-1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913943.2 True 1608 mRNA 0.48 9 30733459 30738572

Neighbor

gene id symbol gene type direction distance location
si:dkey-30c15.17 LOC108264160 coding upstream 5504 30720852 ~ 30727955 (+)
glipr1b LOC108264173 coding upstream 15313 30711773 ~ 30718146 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding upstream 34077 30689935 ~ 30699382 (+)
LOC113526339 LOC108264048 coding upstream 45740 30668276 ~ 30687719 (+)
vwf vwf coding upstream 66734 30628412 ~ 30666725 (+)
terb1 terb1 coding downstream 21613 30760185 ~ 30795802 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 69566 30808138 ~ 30811975 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 77975 30816547 ~ 30825966 (+)
pgr pgr coding downstream 237137 30975709 ~ 30985960 (+)
G107629 bbs10 non-coding upstream 3802 30728834 ~ 30729657 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 170558 30557623 ~ 30562901 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 278076 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 304236 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 376910 30264964 ~ 30356549 (+)
LOC113526871 NA non-coding downstream 89504 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 109387 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 111969 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 116041 30854613 ~ 30868459 (+)
G107660 ppp1r37 non-coding downstream 121626 30860198 ~ 30861847 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 235144 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 1929387 28799464 ~ 28804072 (+)
def8 def8 other upstream 2571590 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2662774 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2767151 27944790 ~ 27966308 (+)

Expression


Co-expression Network