si:dkey-30c15.17 (LOC108264160)


Basic Information

Item Value
gene id si:dkey-30c15.17
gene name LOC108264160
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30720852 ~ 30727955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913947.2
agagcatgtgtggGTAAAACACATCTCTGGGATTCATCTTCCATCAGCGTGAAATCAACTGGAGCTCATCATGGTTCGCTCATCGGTCGCTGGAGTAACCTTGCTCGTGCTGGTTTCCATGGCGACGCCAGACTTGGTGTGTGGGGGCCAAGAGAGAGGCAAGGACTCacgactcacacacactcatttcgcACATAATCAGTATTACACgcctcagactggaggagtgaGGAGCATGACTTTCCAAAAGACACCACGTAATGACATATTGGAGAATAATCACTACAGTGTGCAGATTTCTGAGGCTGAATTAGGTGACGTAAACCCTCGGCCTGAAAATAAACCTGCGATTAGAATTCCTAACTCTGCTCAGTTGCATATGGAACTCTCAGATGATAACGAGTGTAATGACATTAAGTGTAATGACTATGTAAGTGATGGAAAAGGTCGATCTGGTGTGGAGTTTAACAGAGTCACGTGGGATGAAGTGTCAGATGTTACGCCGAAGTCCACTGAAGTCCCtgccgtgcacacacacactgaaggccctgccgtgcacacacacactgaaggcCCTgtcgtgcacacacactccggtCCGGTTCGTGGACTGACGCTGGAAAAAGCTCATGTGTTTTATGGGATTCCGTACGCAGCCCCGCCAGTGGGCCCAAAACGGTGGGCCGCTCCTGAACCCGTGTCTCAGTGGACGAAGCCGTATGACGCCACGTTCCCTCGGCCGGCGTGCATGCAGGCTTGTGCGGGGGAATTCTCTGAAGAGTGTCCTCCTAAGGTGAGTGAGGACTGTCTGTACCTGAACGTGTATGTTCCTGTGAGTGTGGATCTCTCAGAGAAGACCGCTGCTCAGCTTCCTGTCATGGTGTGGATCCACGGAGGTGACTTCATCGCAGGCTCCGCCTCCAAACCGCTGTACGACGGACGCTTCATCAGTAACTATAGCAACACTGTGGTGGTAAACATGGAGTATCGCCTGGGAGCTTTTGGGTTCCTGGTGACGGGAAAAGATCCTGAGAGATCTGCAGTGGGAAATTACGGAATTCTGGATCAGCAGGCGGCACTACGCTGGGTCCAAAAGAACATCGCCGCATTTGGTGGAGACccagtgaaggtgactCTGTTTGGCGAGAGTGCTGGTGCtcagtcagtgtgtttacacCTGATGATGCAGAGCAGTGAAACTCTGTTCAGACACGCTACCATACAGAGTCAGCCTTTCTCCATCCCCCTCAAaaccagGTGGGATGCCATGAAGTTGGGCAGGAACTTTCTGATACATACGACTTGCTCAGCGTCTGACATGCAGTGTCTCCGCTCCCTCAGCACACACACCGTCCTGCAGGCCCAGGTTcaagcagGTTCTAAAATCATCAACCCGTTCCGCTTCCTGGAGGTGTTTGAGACGTGGGGGCCGTATGTGGATGGAGAACTGATCACGGAGCAGCCGATTGCAGCTTTCCAGAAGGGTCACTGGCAGAGTTATAAACCTGTTATAATGGGAACTACATCTGAAGAAGGCGTGATCTTTGTATATGGAGCTTTCAAtggctcagtgtcagtgctggaGTGTATAGTCTACACCACTGCCATCTTCAAGCAGCACACACTCAAAGTCCTACAGAAATACCTTCCCGTCTACCATAAAGTGGACAAACGGACGATGCTGTCTCAGATCGTCACGGATTTCGTCTTCCTGTGTCCGGCGCGATGCTCCGCTCGTGCAGCGCTGAGTATGGGCGGAGCCGTGTGGATGTATGTATTTGACCACGCCCCTTCGGATCACAAAATATGGGCGGGGCTGACTTTCTGTTACGATCACGCCTGCCATGGGGCGGAGCTCCCGTTCCTGTTCGACTCGGCTCCTGTGGCGAACTTCAGCTTCACGGCTCGGGAGAGTCGCCTGGCCAATCAGATGGTGTGTTACTGGGGGGCGTTCGCTCACTCCGGAGATCCGAACTCTCACAGAGAACACACATCTTTCTGCAGGAACCAGAGGCTCGCACCGTGGCCCAAATACACGCCTGCTCGGGGATGGCCAGTTCTGAACTTAACTCTGCAGTCTCACCTTCAGCGCGGAAACAGAGATCATTTCTGTGACTTCTGGGATCGTCTGGATATTTACTGACGGAGGAAGTGACGCAATAACTAATGACAGGATTGATTTATGAACCACAAGcctggaaaaatatatatataattgaaaaATGTGCCttaattgtaatcatttttaGTCTCCTTGAGGAAAGTATATAAATTACTTAGCCGTTTGTTTTAAATCTGCATAACCTTTTAAAGTGTAAAAACTACACATTTATTAACGTTAGATTAATCTTATTGTAATCTTGAACAATTACACTAACTCTGACAAAACTAAGATAAaattcatttgtcttttttatagAATAAATTACTGTAGAATTAGTACTTTTATTAGTGTGGTGTTGAATATAAGTTGAAAATGAACACATCTTATTCAGCTAATAAACCTGCAGCACTCCCTCACTGTGTTTGGGattgtagtgtttgtgtgtttgtgtgtttacagtaagTCAGGGATCTGATTCCAGCCAAACAGGAGCCTGACAGCTGACAGCTGATTAGAGACGAAGATGAACTAATTAAACACGTGGAATCGGGTGTGACTCCTGCCTGCAGCCGCACCGACCCTCTGCGGAGAGACTGAAGACTCCTGCTTTAAgtggtcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggttattTGAGTGTTTGCGTGGC

Function

NR:

description
PREDICTED: cAMP-regulated D2 protein-like

GO: NA

KEGG:

id description
K03929 pnbA; para-nitrobenzyl esterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913947.2 True 2799 mRNA 0.49 8 30720852 30727955

Neighbor

gene id symbol gene type direction distance location
glipr1b LOC108264173 coding upstream 2706 30711773 ~ 30718146 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding upstream 21470 30689935 ~ 30699382 (+)
LOC113526339 LOC108264048 coding upstream 33133 30668276 ~ 30687719 (+)
vwf vwf coding upstream 54127 30628412 ~ 30666725 (+)
si:dkey-88e18.2 NA coding upstream 128712 30585783 ~ 30592140 (+)
syt1b syt1,LOC108264166,LOC108427563 coding downstream 5504 30733459 ~ 30738572 (+)
terb1 terb1 coding downstream 32230 30760185 ~ 30795802 (+)
arf5 arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 80183 30808138 ~ 30811975 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 88592 30816547 ~ 30825966 (+)
pgr pgr coding downstream 247754 30975709 ~ 30985960 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 157951 30557623 ~ 30562901 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 265469 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 291629 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 364303 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 656414 29971482 ~ 30064438 (+)
G107629 bbs10 non-coding downstream 879 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 100121 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 120004 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 122586 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 126658 30854613 ~ 30868459 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 222537 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 1916780 28799464 ~ 28804072 (+)
def8 def8 other upstream 2558983 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2650167 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2754544 27944790 ~ 27966308 (+)

Expression


Co-expression Network