exosc5 (exosc5)


Basic Information

Item Value
gene id exosc5
gene name exosc5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25035513 ~ 25040089 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913986.2
AGCGCCCAAAACGATGACGATTAAAAGGCGCGACAAACACTTGCTGTAATGAAGCACGCCATGATGGAGCTGGAGATCAGTAGTCCAGTTCTGAGGGAGTTTGGCAGTGAACAGAGTTTATTATCCAAACCTGACGGTTCAGCCACGTTTATGcaagGAGACACCAGTGTGTTGGCAGGAGTGTATGGACCAGCTGAGGTTAAGGTGAACAAGGAGATCTATGATCGAGCAACTCTGGAGGTTCTGATCCAGCCCAAAGCTGGCATGCcgaGTGTCCGTGAGCGCACGAGAGAGCAGTGTGTGCGGGAGACGTGTGAGGCTGCTCTGCTGTCCACGCTTCATCCTCGCTCCTCCCTTACACTCGTCCTGCAAGTGGTGCACGATGACGGATCGTTGTTAGCGTGCTGTCTGAATGCTGCGTGCATGGCGCTGATGGATGCCGGGCTGCCCATGAGCCGCCTGTTCTGCGGCGTCACGTGTGCCATCGACGCCGAGAGCCGAATCATCACAGACCCCACGGCTCAGCAGGAGAAGGAAAGTCGAGCGCTAATGACTTTTGCAATCGACAGTAAAGAGCACAATGTCATGATGTCATCAACAAAAGGTTctttctcagtgaaagagATGCAGCAGTGTATAGCGGTCAGCCAGAAGGCGTCTGAGCGGATCTTCCAGTTTTACAGGGATTCTGTGAAGCGACGATACTCCAAAATATTATGAAATCATTCTTTCCCTTGTATTTTTCTGattcaatttttttcatattaaatgtAGTACTTAAATGTACA
>XM_026913987.2
AATGAGCGCCCAAAACGATGACGATTAAAAGGCGCGACAAACACTTGCTGTAATGAAGCACGCCATGATGGAGCTGGAGATCAGTAGTCCAGTTCTGAGGGAGTTTGGCAGTGAACAGAGTTTATTATCCAAACCTGACGGTTCAGCCACGTTTATGcaagGAGACACCAGTGTGTTGGCAGGAGTGTATGGACCAGCTGAGGTTAAGGTGAACAAGGAGATCTATGATCGAGCAACTCTGGAGGTTCTGATCCAGCCCAAAGCTGGCATGCcgaGTGTCCGTGAGCGCACGAGAGAGCAGTGTGTGCGGGAGACGTGTGAGGCTGCTCTGCTGTCCACGCTTCATCCTCGCTCCTCCCTTACACTCGTCCTGCAAGTGGTGCACGATGACGGATCGTTGTTAGCGTGCTGTCTGAATGCTGCGTGCATGGCGCTGATGGATGCCGGGCTGCCCATGAGCCGCCTGTTCTGCGGCGTCACGTGTGCCATCGACGCCGAGAGCCGAATCATCACAGACCCCACGGCTCAGCAGGAGAAGGAAAGTCGAGCGCTAATGACTTTTGCAATCGACAGTAAAGAGCACAATGTCATGATGTCATCAACAAAAGGTTctttctcagtgaaagagAAATACTCCAATAGAGCAGTCTCCTTTTTTCCCAAGAAAGCAGAAGATGAGCCACTCGACATACGAATCTGGAACAATTCATAGAGTTGCATAAGTGTTTTAAAATTTCCCATATTATCTGACCtgctggaagccccgccccctttcctATTGGTTTCTGTTGGTGCACTCGTCTTGACTC

Function

symbol description
exosc5 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC5 (exosome component 5).

NR:

description
exosome complex component RRP46

GO: NA

KEGG:

id description
K12590 RRP46, EXOSC5; exosome complex component RRP46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913986.2 False 788 mRNA 0.50 6 25035517 25040089
XM_026913987.2 True 809 mRNA 0.51 6 25035513 25038677

Neighbor

gene id symbol gene type direction distance location
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding upstream 23772 24991782 ~ 25011741 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 408484 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 568037 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 573810 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 608385 24392298 ~ 24427128 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 96925 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 100063 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 210253 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 228804 25268893 ~ 25282220 (+)
dusp8b LOC108264845 coding downstream 727329 25767418 ~ 25777506 (+)
G104520 NA non-coding upstream 22734 25011916 ~ 25012779 (+)
G104523 NA non-coding upstream 99634 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 208366 24826766 ~ 24827147 (+)
G104429 NA non-coding upstream 271401 24762642 ~ 24764112 (+)
G104325 NA non-coding upstream 401108 24575492 ~ 24634405 (+)
G104554 tmem91 non-coding downstream 17786 25057875 ~ 25061300 (+)
G104739 NA non-coding downstream 202711 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 203392 25243481 ~ 25243878 (+)
G104751 NA non-coding downstream 205575 25245664 ~ 25245865 (+)
LOC117597584 NA non-coding downstream 300534 25340623 ~ 25342308 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1272468 23739502 ~ 23763045 (+)
G103830 NA other upstream 1405790 23615103 ~ 23629723 (+)
serp1 NA other upstream 1459800 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1776256 23163646 ~ 23259257 (+)
relt relt other upstream 1886641 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 193536 25233625 ~ 25240213 (+)
G104781 NA other downstream 254810 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1790889 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2171300 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2486034 27526123 ~ 27545526 (+)

Expression


Co-expression Network