clns1a (clns1a)


Basic Information

Item Value
gene id clns1a
gene name clns1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23321627 ~ 23328390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914026.2
AGGAGGTAGGGCGCTAGGTAGTGATTTGAGACGCGCCCTGGAGCTCATGTGGCGCGCATGGAAACGACGAAGTAACGCGTACCAGTGTGGTGCTTTAAGCAGAAAATAGTTTGTTTCCAAAGCGTTTGTTCgctttttaatcagtttacaCTATACTGTGCAAATGTTTattgtgtaaagctgctgtaTTCGTTTTTATATTTAGCTAAAAATACGTCAGTTGCTATTTCAGGCTAGCAGCTCTGTTGTTGTTAGCTAGCATCTTGTTGTTGTTTAGCCGCTGAGACCACTGAGGCGAGGTAGCTAGCTTTAGGAAATAAATAAGGTGACAGGTGAAGTGTTTTAGTCAGTTTGTGAAAAtatggttttgttaaaaagttTGCCTCCTCCTGCTGAGGGAGTTCGGCATCAGCAGGCCGAGACTACAGCGGTTTTAGACGGTAAGGGACTCGGCACAGGGACGCTGTATGTGGCCGAATCGTGCCTGTCGTGGTTCAATGGCTCAGGAATGGGTTTTTCACTGGAATATCCCTCCATCAGCCTGCACGCCATCTCCCGAGACCTGAGTGCTTATCCACAGGAGCATCTGTACGTGATGGTCAACAAAAAACTGAATGATGAAAATGAGGCTGAGATGCGGGAGAAAGCTCCAGATGAGGAAGGCGAAGAGGAGAGCGACgacgatgatgaagatgaagtcATCACCGAGATCCGATTTGTGCCCAGTGATAAAGCagcttTGGAGTCCATGTTTTCCGCCATGTGTGACTGCCAGGCTTTGCACCCTGACCCTGAGGATGCAGACTCTGACAACGAGGAGTTTGAAGGGGAGGAAtatgaagaggaagaggaggagagtgGCCAGGGTGACATACCTACGTTCTACACATATGAAGAGGGTTTGTCCCACCTCACTGCAGAGGGCCAGGCCACGCTGCAAAGACTCGAAGGGATGCTCGCTCAGTCTGTCACGCAACAGTTTCACATGGCCGGAGTTCGCACTGATGAGCCATCAGCTGAGTTTGAAGATGGAATGGAGGTCGACCCAAATTCTGCAGTAGCTGGACAGTTTGATGATGCTGATGTTGATCACTGGTAA
>XM_026914027.2
AGGAGGTAGGGCGCTAGGTAGTGATTTGAGACGCGCCCTGGAGCTCATGTGGCGCGCATGGAAACGACGAAGTAACGCGTACCAGTGTGGTGCTTTAAGCAGAAAATAGTTTGTTTCCAAAGCGTTTGTTCgctttttaatcagtttacaCTATACTGTGCAAATGTTTattgtgtaaagctgctgtaTTCGTTTTTATATTTAGCTAAAAATACGTCAGTTGCTATTTCAGGCTAGCAGCTCTGTTGTTGTTAGCTAGCATCTTGTTGTTGTTTAGCCGCTGAGACCACTGAGGCGAGGTAGCTAGCTTTAGGAAATAAATAAGGTGACAGGTGAAGTGTTTTAGTCAGTTTGTGAAAAtatggttttgttaaaaagttTGCCTCCTCCTGCTGAGGGAGTTCGGCATCAGCAGGCCGAGACTACAGCGGTTTTAGACGGTAAGGGACTCGGCACAGGGACGCTGTATGTGGCCGAATCGTGCCTGTCGTGGTTCAATGGCTCAGGAATGGGTTTTTCACTGGAATATCCCTCCATCAGCCTGCACGCCATCTCCCGAGACCTGAGTGCTTATCCACAGGAGCATCTGTACGTGATGGTCAACAAAAAACTGAATGATGAAAATGAGGCTGAGATGCGGGAGAAAGCTCCAGATGAGGAAGGCGAAGAGGAGAGCGACgacgatgatgaagatgaagtcATCACCGAGATCCGATTTGTGCCCAGTGATAAAGCagcttTGGAGTCCATGTTTTCCGCCATGTGTGACTGCCAGGCTTTGCACCCTGACCCTGAGGATGCAGACTCTGACAACGAGGAGTTTGAAGGGGAGGAAtatgaagaggaagaggaggagagtgGCCAGGGTGACATACCTACGTTCTACACATATGAAGAGGGTTTGTCCCACCTCACTGCAGAGGGCCAGGCCACGCTGCAAAGACTCGAAGGGATGCTCGCTCAGTCTGTCACGCAACAGTTTCACATGGCCGGAGTTCGCACTGATGAGCCATCAGCTGAGTTTGAAGATGGAATGGAGGTCGACCCAAATTCTGCAGTAGCTGGACAGTTTGATGATGCTGATGTTGATCACTGATGCAGTATACTCCACTGCTGTTACCTGAAGCACTTAAGAGGCTCTGAGTGACCGGGACTCGTTCAGCGAGCCGACTTCTCCAGTCTGCTCCCCACATTAAGTGGAGCTGCTGGATTTCAACACAGGTTTCCCCGATGCCAGCaccatttctgtttctgtgttatGTTTTGTATTCTTCCTTCAGACCAAATTATAAGTGCTCTCTAAAAGTAAGTCATATTTGTATGAAACGCcatgaaataaaatagttttttgtATAAAGCTCTTGTAAAAGATGTCTAATTCCCTTCTAGTTGtggattttttctctttttggagCACTTAAAGCCTGATAAGTGCAAAAAGTGGACATTTTGCACTCCATCTTCTTGGAGCCATTTTATTGCTCAGAATGGTGTCATTGTtagattcagattttttttttttgtactcaaGAAACTATTAGTGTGAAATTTGGTCTGGAAAAGCTGTAAATATTCAGCAACATTCAGTCTTCAAGCTGcacttatacagtatatgtggattttattgttgtgtgtgGTATCTTGTTACTGTAACTCTTACTTGTGAGAGTGCGAGTCTGGAACAGACTTTTTTCCTACAATGATGCATACTTTGTTTGTTGTTAAGTCATAAACATGAATCTACACTCTGTATAAGCATAAAGAAAGGTTTTGTATCCAAGAGGAGACAACCTCAATAAAATATTCTTTCACAGGACTAAGCTATAAAA

Function

symbol description
clns1a Acts upstream of or within axon extension. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be part of spliceosomal complex. Predicted to be active in cytosol. Orthologous to human CLNS1A (chloride nucleotide-sensitive channel 1A).

NR:

description
PREDICTED: methylosome subunit pICln

GO: NA

KEGG:

id description
K05019 CLNS1A; chloride channel, nucleotide-sensitive, 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914026.2 False 1099 mRNA 0.49 6 23321627 23326611
XM_026914027.2 True 1829 mRNA 0.44 7 23321627 23328390

Neighbor

gene id symbol gene type direction distance location
rsf1a rsf1 coding upstream 4829 23299556 ~ 23316798 (+)
ints4 ints4 coding upstream 24179 23281419 ~ 23297448 (+)
kctd14 kctd14 coding upstream 41066 23275715 ~ 23280561 (+)
LOC113527008 NA coding upstream 47118 23274359 ~ 23274509 (+)
LOC113527009 NA coding upstream 48169 23273308 ~ 23273458 (+)
pak1 pak1,LOC100698864 coding downstream 18440 23346830 ~ 23414735 (+)
gdpd4a gdpd4a,LOC108264809,LOC108431176,LOC107660699 coding downstream 100766 23429156 ~ 23452560 (+)
ompa omp,LOC107735103 coding downstream 192945 23521335 ~ 23522256 (+)
LOC113526461 NA coding downstream 212844 23541234 ~ 23545871 (+)
pcyt1ab LOC108264716,LOC108440592,LOC107717621,LOC107670596,LOC107758059,LOC107575479 coding downstream 253750 23582140 ~ 23591781 (+)
G103376 NA non-coding upstream 133964 23187152 ~ 23187663 (+)
G103327 NA non-coding upstream 215386 23106142 ~ 23106241 (+)
G103331 NA non-coding upstream 314987 23000367 ~ 23006640 (+)
G103301 NA non-coding upstream 422190 22899063 ~ 22899437 (+)
G103297 NA non-coding upstream 452344 22866740 ~ 22869283 (+)
G103606 NA non-coding downstream 87105 23415495 ~ 23416103 (+)
G103688 NA non-coding downstream 217727 23546117 ~ 23546390 (+)
G103828 rnpepl1 non-coding downstream 370462 23698852 ~ 23702964 (+)
G103832 NA non-coding downstream 375198 23703588 ~ 23705228 (+)
G103889 NA non-coding downstream 401488 23729878 ~ 23738753 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 62370 23163646 ~ 23259257 (+)
relt relt other upstream 172755 23113084 ~ 23148872 (+)
LOC113526422 p2ry6 other upstream 338028 22942709 ~ 22983599 (+)
zbbx zbbx other upstream 1508417 21762447 ~ 21813210 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 2219411 21026027 ~ 21102216 (+)
serp1 NA other downstream 244161 23572551 ~ 23575713 (+)
G103830 NA other downstream 286713 23615103 ~ 23629723 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other downstream 411112 23739502 ~ 23763045 (+)
LOC113526839 NA other downstream 1905235 25233625 ~ 25240213 (+)
G104781 NA other downstream 1966509 25294899 ~ 25315213 (+)

Expression


Co-expression Network