six5 (LOC108264811)


Basic Information

Item Value
gene id six5
gene name LOC108264811
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24448341 ~ 24461703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914032.2
CTCTTTTTCGAATCGTCCATCTCAGTATACCCGGAGAATGGGCTGAGGGAACGacgagggagggaggaggaaccgaaagagaaaaaaaagttcaactaAAAAATGGCTTCCTTGTCTTTGGAGTCTCCAGAACAAACGGAGAATGGAAGCGCCGAGGAGTCCGGGCAAACAGAAGCCCGAGTCAAAGAGGAGACGGACTCGGAGGAAGTTTCTGAGCGGCTGTTTGAGACCTTCCCAAAGTCCGCGCTCGGCTTTTCCAGTGAGCAGGTCGCCTGCGTGTGCGAGGCTCTCCTGCAGGCGGGCAACGTGGATCGCCTGTGGAGCTTCCTGGCCACCATCCCTCCTTCGTCCGACGTGCTACGTGGCAACGAGACCCTGCTTAAGGCCCAGGCCCTGGTCGCTTTCCACCGCGAGGACTTTACAGAGTTGTACGCCATCTTAGAGAGCCGCGACTTCCACCCGAGCAACCACGGGTTCCTGCAGGACCTCTACCTGAGAGCGCGCTACAAGGAGGCGGAGAGGTCGCGGGGTCGCAGCCTGGGCGCCGTGGACAAGTACCGGCTGCGCAAAAAGTTTCCCCTTCCAAAGACCATCTGGGACGGAGAGGAGACGGTGTATTGTTTCAAGGAAAAGTCACGCAACGCCCTTAAAGAATGTTACAAAGTTAACCGGTACCCAACTCCGGACGAGAAGAAAAATCTGGCCAAACTTACTGGACTTTCTTTGACCCAAGTGAGCAACTGGTTCAAGAATCGGCGACAGAGAGACCGAACTCCATCCGGTACCAACAGCAAGAGtgaatCTGATGGAAACCACAGCACAGAGGATGAGGCTAGTAAGGCTGATCTGGAGGACATTACCGACAAACCTGCTGCTCAAGAGGCTGGAGGCTCAACTGCTTCGCTCATATCCCTTTCTGGTGCCCCCTGTAGTACTGGAGGTCAGCTCATTCTCAATAACACAGGGGGATTCCTTACTAGTCCTCATCCCCTGTTGCTCAATGGGAGCCCATTACTGTCAGGGACTGGAACTGGTGTCATCATTAATGGACTGACTCTGAGCGATGGTCATGCAGTCACCCTCAGTCCTGTAACTACTAACACTCCACTTTTACTCAATGGGGCTCAGGTTATATCTAAGGGTAGTGGGAACAACAGCACCCCAGATGAAAACTGCATTACCAAAATAGAAACGCAAGCCAGCCTCACTACGACAGTCCCTGTCTCATTGACAGAGGAAACGAAAGTGACCAACCATAATGTTTCTCCGTTGGACTTCATTACTGTTCCAGAGGCTATGAAGGCTCAAGATAGCACCCAAATGGTGCCTCCCACCTCCATATCCACATCCACAATCTCTTCCACAATAATGACTCACACCTCCCTTCCTTCATTAGCATTGACTCAAAATGGCATCCTTTCTTCTGCAGTTCCCCCATCTGGTGCAGTTATTTCCAACCCTGCAATGCCACTACAATCCACCCAGCAGCCTGAGCTTGTGGTGGTAGCAACAGCTGGTTCCCAGATAAACCCTacttcttccatttcacaaaTAGCATCTTCTTCCACTGTCTCTAGCCCTCAGGTTCTTTCTTTGCCCCAGGTGGTACCATCCATCCAGGGTATTCCAGTATCTCAATTAGTGCAGCACCCAGCAGGGACTCCGTTGTCATGCCCTCAGTTGGTTCCAGTGTCCCCCATTACCACTCAGCTATCCCAGAGTTCCACTCCTCAGTTTCCAACCCCCAGTCTGCAAATTGGGCCAAGGCTTACTCAAGCTCAAGCTCAGAATGGATCCTCTGCACTTGGCGAGAACACTGTCGTGTCTGTCCCCCGGGTGCCTAATGGACAGGCTCCACAAGGGCTGACACTTCAGTTAACAGACCAGTCCAATTCAGCCCCCAccccacagacacagaccccGCTGGGTACACAAGGCATTCCCATCTCCTCACCAACACAAGTAGTCCCTGTTTCACAGTCCAAGGACACAGGGCAGCCCCAGCTGGTACCTTTGCCTCAACTCATGCCTGTATCCCCCATTGCTGGAGCACCTACAGGGACCATATCCTTTCCTCAGGTGGTCCCAGCAGCACCCTCTTTCTCCATTCCAACTCCGGGAGGTGCTTTCCAAATCTTAACATCTGGCTCTGGAGGAGGAGTTGCTGTGCCCCAGGGAGCTATACGTATAAGCCCCATAGGACCTCCTCAGAGTGTGCCAACAGCTGGTGCTATTCCAGGTGTCCAGCTTCTCAATTCCGGAGTGATTCAACTTCCTTCTGCATCTCCAGGTAACTTCCTCCTGGCAGGTGGAGGTCCATTTCTGAGTGTTCAGAATGGCAAACTCATCCTCACCATCCCAGCTGGTTTCCAGTTTACCAGCATGCCTGTCAAATCCATCCCAGAAAATCCAGGCCCAAGCACTAACAGCAACAGTGGACTGGAACAAACCTCAACTTCACTACAAAATCAGCCAGTCTCCTTATCCTCTGCCCAGACCTCTACTCCCTTTCAGTCGTCTCCTTTAATTGGCTCATCTGCGCTTTACTGTAGTCCTGAGCCTGGAGCCCTGGCTAACCCTACACCAGGAGCCTCTCCAAACACTTCAGACTCTCCGACCCCAACCCCGACTAGTGTGCTGCCATCCCAACAGACCCTCAGCCCTGAGAGCATGCTGTCATTCAGTCCCCTCAGCAGTGGTGTAGCCAGTGGTCCCCATCTCATTCAACCTGCTTGGAGTCCCGTGCCACTGTCATCCTCGTCTGGACTCACACTGTTTGATGTACGTGGGAAGGGGGATCTACCTGAGGACCCAGCTTTATTGGGCTTACCAGGTGGGGAGTCCCTGCTATTGGGTACCCCTCCACCAGGCGATGATGTACATAGGGAATCTCATCTGGACGATGtggagatggatggagatgCAAAAATTCTTACCCAACTGCAGTCTGTCCCTGTGGATGATGATTTGGGTTTGTAACCATTCTTCTCTTGGGCTACCTTTTAGAAGCCCTAAGACAATCTTGATACTCGGTCCACAGCACTCTATATTTTGTTATGAGTCAATGTATGGCATTAGAGAAAGGAATCATGGTAGACTCGTGGTAAATGATGCCTGATTTGTACATTTACAGATTCATGTCAAAACAGAATGGCCCACTTATTAGTTTGTAGGTTTTGTTAGGTCTAACATCATCTCCCTTTTGAGATTCACATTAAACAGTCATAGGTTGTGGAGGTTTTACTTCCCACAGAAAGACATAGGGATTAATGGCATTTGCAGAGATGCATGGAAAGAACCCATTACCCAATagcagggctttttttttttacaatataaatCCTGCACTATCACTAGAATTTACCATGCAATCagatttttattagtttatgaGACTTCACAGTTAATGTTTGTAATGAATCAAACACTCCAGTCAATCACTTCATTCCATTCAGAGAAGGCACTGCTGACCATTTTatttgaaagcaaaaaaaggctAGCTGCTAGTGTCAAACCCACACCAAGTATAACATATGTGGTAAATAAACAGAAGCCTAAATAGGAGACTATTTctgtatataattaattttagcCATTTCTGCAAAACTAAACTTGTTTATTGGATTTTACACCACATTTTAATTGGCATTTTAAAGTAATGAGAATAACAAGtagttgttttttgttattgtgttaatCACATACTGTCTCACTCCTAGGGCCTGTCTCATAAAGCAGGATTTTGTTTGGTTAGCTAGCTGTCTTTGAGGTCATTGTGATCTTACTCTATCTCCTGACAGTGGTTCACTTTTTACTCAGTTAAACTGCCGTAGTGACGCATATTGCACAGGTAACTTGTTGTGACGCAGATTAGGTTCTGGATTACAGAACATAAACTGTTGTTCATCTCTTAGAAAAATGACACTTATTCCCTAGAATAGGCTACTAATCTTTCACTGTGAAAATGGTTTTAGCATTTCTTTAAAACCTATGGAATTAGGAGCATAAATTGTGAAAAGTCACTTTACACTCCAAGCACATTTACAGACTGACAAAGTTCCTTGGATTTATccgattattttttatatcagaCATATAGAATTTCCACTGAAATTCTTTTTGAGTGTTAAATAGTAAAATTCCACTCACAGCTGCTGCTCTCATTGTTCTagtatatttatatgcataCTGCTTGCTAAGTTCATTACAAGGTAGTCATTTTACCATTTACTCAATATGGCCATAAAAGGGGACTTCTACAGAAGTGCACTGATGATGCAAACatacctgtgattaaagaaaattactggTATCATTAGTGGATCATTATAGTATAAGCTGATACACACGTTATCGCACAGTTTTTTATTGGGATCACCTCATGCAATGTGagaagtaataatcttaaatgcCACTGAAATCCCACAGTGTAAAACAAGCTTTAATGAGGAGCCCAGGTTATGATAAACCTGCTTTATGAGCCAGACACCTGGATATAGGACTGTGTGTTGACATCGGAACGTGAAGTAGCCTAACCTACACATCTTATGACCATGCCATTTTTCACAATgagtacatttttaatgacaacGTAATAgactatgtttttgttttcaataGGATTGCTTTAAATGGTTTATGAAACTAGACCTGGATTTTTCAGACAGAAAGCTTAAGTTGCCTTTGTGTTGGATATTGAGGTGAAGTACGCAATCTTTAACGTTGTTCTATCCTTAATGGGAAGAGAGGCATGTTTTTAAAAGGTAAACATCTGATAAAATATAGTATCAGGTATTTTATcggttttaaatgttttgttgtgcTATCTGTCTACTTTAGCATTGTAATCATCTGCagtatgtatatacattttattcattcatgtacATCCAAAGACTGAACTAGTTTTCCAGAGCATTAATTGTTTGTCTGTGTAATGTCAGCCCATAACGCCTAATGTTTTCCACACCTGCACATTTTTGCTATTTAAATTATGCACCGTAACTTAACCATACAAGAAGTTGTCTATTACTTTTCATAGTTAGTTTCTGATTTAATAAACACTCCCATCCATCACTACAGTGTAGCACATGCTGAGAAGGTACTGTTAGCCAagttatttgaaagaaaaagggCTTATTACtgttagattttattatttttatctatgCAAAGACTAAGTTGAATTTATGTGAAAAGAAGATTGGTGCTGCCAAATTGGCATTAGTGTTTTTAGATGAACCAGTTACTATACAGTTAAAGCTAAATCCTATGAACCTGACATACTGTTGAATGCGATTCTTCACACTACACGTTCATCAATTATGTGCAAATATAATGtctgttattttctattttcatacTGAGAATTTTTTAGGATTTATTTCAAGTTACACACTATGACTGTtgtctttcatttttgtgtagTCAAACTAATTGTGCATTGATGATTCCGGTCAAAGCTAGAATCAAATGtctattttcatgttttgtatGTGGTAAGGCCAGTCAATACTGTGTTGGTAATATTTCATAAGTAACTTTATGGGTATGATGTACCATACACGTCTATGGAATTGGCTCACTCGATTTCAGAAATACCATTTTTGGCATTCCTGGGTGCATGCGAAGTTAAAAGCTGTAAATGAAATTGGACTTCATCTAAAATTATGGTGCTTATCTCCAGTAGGCCAACgtcttattattttgcacatttcagCCATGAACTGTCATTTACTCTCCTCTTGGTAATATCATTGGTCCTACTGAAGCCATCAAGAAATTTTCTCCACTCTTGACCTATAAATGAGTGGTGATGTGACACTACCGCAAACCTTATGTACTGTTATGTTGCAGGAAACAGTGTGTTAATTCCAAACCTAAATGTGCCTTTTCCTGTTCTGTATGTTTTACTTTTCTGTGTATATTTAAAGCATtagcaggggtggacaaatcgcTAGCCTGGGTGCCTGAAGCATGCAGGTTCAGTGTTCAGCAGGGTGTTAATATACCTTTAATGGATGCTAGACAATATTTCCAGAATCAGGAATATGAAGGGAAACAGTGACTAAGCTGAGCCAAATATAGTACAGTGCAGCACAAAAACTGTTATATAAACCTAATGCTATCTCAACACACAGGCACCTCACAATTAACACTTTACCGGGTGAAAATGAAGACTCTAACTAGACTTAAATATCGTCTTTATGTGCGATGAGAGAACACCAGAGCTCGTAGCTGAAATCTTAGCCAAAGACTTCGTGCCTTTTTGTCTAGGGTCCAAACATGATTCTCAGATTATCAGGAGAGGGTAAAGACTGTAGCTACATAAAACCACCCCTCCCAGGGATTCAAACACTCTTTAAAATCTATTCAACTAGACTAAAAAGTGGCAACTAACATAATTTGTTTGTTATACTTGAGTTAAATTGCATTAGTTACCACTTTTTATTCTATTCAAATAGATTTCTGGGAACCAAAACATGGAACTGGGTAGCACATTGGAGCTGGAGGACTGGTGGGCTGATTAATAAATtggatttgtccacccctgattAATTAGTTATGAACCAGCATTCTGATATTGGTGGATTTGCAGAGGTCCATCAGAATTCTTCTGTTGCATTTTCTGTATACTTTCTGGAAATAGCTGTATTTTAGAAGTGTATTCAAAATAGGACATGTAGCATTTATATGCCAAAGGCTTGTattactttttctgttttatttcttccatGCACCTGAACAATGTGTTGTTTTCCCAATATGTAAGAAAAAGGGAATCTGTgcgtgtggttgtgtgtgtctgtgtatgcatTGGTATGAATGAGCAACAAGTAATGAACTTTCCTGTTGCTGTTATTGaatgttaaaattattatttgtggCTTATTTTAGCATAGTTGTTACAGTACTATCAAATATACAAAGCCACAATCATCTCTATTCCGAGGAAAATACACAGCTAATTGAACCAAAGAATTTTGCAATGtactttaaatttaataaagggATTTTATTGTTCCCAGCATGATAAAACAGCA

Function

NR:

description
PREDICTED: homeobox protein SIX5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19474 SIX5; homeobox protein SIX5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914032.2 True 7043 mRNA 0.43 3 24448341 24461703

Neighbor

gene id symbol gene type direction distance location
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 21213 24392298 ~ 24427128 (+)
cep126 NA coding upstream 63895 24368079 ~ 24384446 (+)
si:ch211-71n6.4 LOC108264393 coding upstream 99045 24339635 ~ 24349296 (+)
pex16 pex16,LOC107758067 coding upstream 113276 24323720 ~ 24335065 (+)
wt1b wt1,LOC108264570 coding upstream 572296 23856438 ~ 23876045 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding downstream 1123 24462826 ~ 24467476 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding downstream 120501 24582204 ~ 24627029 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding downstream 530079 24991782 ~ 25011741 (+)
exosc5 exosc5 coding downstream 573810 25035513 ~ 25040089 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 675311 25137014 ~ 25139561 (+)
G103896 NA non-coding upstream 694081 23749063 ~ 23754260 (+)
G103889 NA non-coding upstream 709588 23729878 ~ 23738753 (+)
G103832 NA non-coding upstream 743113 23703588 ~ 23705228 (+)
G103828 rnpepl1 non-coding upstream 745377 23698852 ~ 23702964 (+)
G103688 NA non-coding upstream 901951 23546117 ~ 23546390 (+)
G104257 NA non-coding downstream 18662 24480365 ~ 24484096 (+)
G104284 NA non-coding downstream 102929 24564632 ~ 24571887 (+)
G104325 NA non-coding downstream 113789 24575492 ~ 24634405 (+)
G104429 NA non-coding downstream 300939 24762642 ~ 24764112 (+)
G104509 NA non-coding downstream 365063 24826766 ~ 24827147 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 685296 23739502 ~ 23763045 (+)
G103830 NA other upstream 818618 23615103 ~ 23629723 (+)
serp1 NA other upstream 872628 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1189084 23163646 ~ 23259257 (+)
relt relt other upstream 1299469 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 771922 25233625 ~ 25240213 (+)
G104781 NA other downstream 833196 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 2369275 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2749686 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 3064420 27526123 ~ 27545526 (+)

Expression


Co-expression Network