ubl7b (LOC108264398)


Basic Information

Item Value
gene id ubl7b
gene name LOC108264398
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26303120 ~ 26311502 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914047.2
CTCTCCCGTTAGTCTGCGCACGACTGATAAACCgtgtagaagaagaagcagaagaagaagcagcagcagaagaagaagtCTTTGTTTACACCCGTGCCGGATCATCTGAGGGCAAGTTTGTTACCGATAAGCTAATTTAGGACATGGAAAATCCTTTTTGGCATCTGTCTCTGAAGCTTCACAACAGGCCGAAGTCAGTGTTGCCTTTCCCTGAGGATGTTGAACCTGGAAGCTACATGGTGGCCACCATAAAGCAGCTGGTCTCAGCGCAGTTACCAGACTCACTGCCAGATCCGGAGCTCATAGagctgGTTCACTGCGGGTGTAAACTAAAAGACGACTTGACATTAGATTCCTATGGGATCAAATCAGGATCTACATTGCACATCTTAAAGAAAGTGTGGCCAGAACCTGCGGTCAAGCCAGAACCAGTGAACAGAAGTGCTGCAGCGAGAGAGTTTAGACTGCTTCAGGCTGCCATGCACTCCAGTGCTGCGTACAGAGAGGCAGTGTTTAAGATGCTGAGCAATAAGGAGTCTCTGGATCAGATCATAGTGGCCTCCCCTGGGCTCAGCTCAGACCCTGTCGCATTGGGTGTTCTACAAGATAAGGATTTGTTTGTGCAGTTCACAGACCCCAATCTgcttgatgtGTTGGTCCGATCTCATCCAGCGCTGGTTAATGCCATCATTCTGATCCTCCACTCTGTGACGAGCAGCATGCCTGGCCAATCAAATGCAAGCTCCTCCCACAATGCCCCTGCTAGTTCCTACAGTGAAATGCCAGGAGGATTTATGTTTGAGGGCATgtctgatgatgaagatgatttcCAATCcGGAAGTCGTGCAGGCTCATCCCAGCGGCCGAGACCTCCAACCAATCTGAGCAGCGGCGGAGCTACAGGGCCTCGACCTATCACTCAGAGTGAGCTAGCTACAGCGCTAGCTCTGGCTAATACACCAGACAGCAGTGCAGTCACACCCATTCTGGGCAGCCAAgacgTGTCCACTGGCAgttcttcagcagcagcagggaCTCCTGTCACTAGCAGTGTGTTGAGTCGGGCACTACAGCAGGCTCTGGAGGCTTCTGGGGTGACCCCTCTGcagGGGCGCTGGCAGACGCAGATGCAGCAGCTGAGAGATATGGGCATCAGAGACGAAGAGCTGGCATTACGAGCCCTCCAGGCTACAGACGGAGACTTGCAAGCAGCACTCGAGCTCATTTTtgctggaggaggaggactCTGAGGCCTAGAGGTCTAAGGATGGAGGAAACTTTTACATTAAAAACTTTAGATATTACATCTGTaatacatcattttttaaattttttggaAATTAGTACTAAATAAATGGAACAAAGTACTGGAA
>XM_026914049.2
CAGTCCGCCAGGGGGCGATAGCGCACTCTCCCGTTAGTCTGCGCACGACTGATAAACCgtgtagaagaagaagcagaagaagaagcagcagcagaagaagaagtCTTTGTTTACACCCGTGCCGGATCATCTGAGGGACATGGAAAATCCTTTTTGGCATCTGTCTCTGAAGCTTCACAACAGGCCGAAGTCAGTGTTGCCTTTCCCTGAGGATGTTGAACCTGGAAGCTACATGGTGGCCACCATAAAGCAGCTGGTCTCAGCGCAGTTACCAGACTCACTGCCAGATCCGGAGCTCATAGagctgGTTCACTGCGGGTGTAAACTAAAAGACGACTTGACATTAGATTCCTATGGGATCAAATCAGGATCTACATTGCACATCTTAAAGAAAGTGTGGCCAGAACCTGCGGTCAAGCCAGAACCAGTGAACAGAAGTGCTGCAGCGAGAGAGTTTAGACTGCTTCAGGCTGCCATGCACTCCAGTGCTGCGTACAGAGAGGCAGTGTTTAAGATGCTGAGCAATAAGGAGTCTCTGGATCAGATCATAGTGGCCTCCCCTGGGCTCAGCTCAGACCCTGTCGCATTGGGTGTTCTACAAGATAAGGATTTGTTTGTGCAGTTCACAGACCCCAATCTgcttgatgtGTTGGTCCGATCTCATCCAGCGCTGGTTAATGCCATCATTCTGATCCTCCACTCTGTGACGAGCAGCATGCCTGGCCAATCAAATGCAAGCTCCTCCCACAATGCCCCTGCTAGTTCCTACAGTGAAATGCCAGGAGGATTTATGTTTGAGGGCATgtctgatgatgaagatgatttcCAATCcGGAAGTCGTGCAGGCTCATCCCAGCGGCCGAGACCTCCAACCAATCTGAGCAGCGGCGGAGCTACAGGGCCTCGACCTATCACTCAGAGTGAGCTAGCTACAGCGCTAGCTCTGGCTAATACACCAGACAGCAGTGCAGTCACACCCATTCTGGGCAGCCAAgacgTGTCCACTGGCAgttcttcagcagcagcagggaCTCCTGTCACTAGCAGTGTGTTGAGTCGGGCACTACAGCAGGCTCTGGAGGCTTCTGGGGTGACCCCTCTGcagGGGCGCTGGCAGACGCAGATGCAGCAGCTGAGAGATATGGGCATCAGAGACGAAGAGCTGGCATTACGAGCCCTCCAGGCTACAGACGGAGACTTGCAAGCAGCACTCGAGCTCATTTTtgctggaggaggaggactCTGAGGCCTAGAGGTCTAAGGATGGAGGAAACTTTTACATTAAAAACTTTAGATATTACATCTGTaatacatcattttttaaattttttggaAATTAGTACTAAATAAATGGAACAAAGTACTGGAA
>XM_034305023.1
TAGCAGTAGTACTTGATTTGTACTTGATATAATTTGATTGAATTAGAGATAAAAATCTGACACTATACTTgactacacacatatatttgACACATTGAGTTTTAGTTAGCTAGCAGCATTATTTTCTGACATTAGGCctatttaatgttatgtttaGTAGATGGACAGTTTctgaatctaaaatgtttccAGACTTGTTTTGACATGGAAAATCCTTTTTGGCATCTGTCTCTGAAGCTTCACAACAGGCCGAAGTCAGTGTTGCCTTTCCCTGAGGATGTTGAACCTGGAAGCTACATGGTGGCCACCATAAAGCAGCTGGTCTCAGCGCAGTTACCAGACTCACTGCCAGATCCGGAGCTCATAGagctgGTTCACTGCGGGTGTAAACTAAAAGACGACTTGACATTAGATTCCTATGGGATCAAATCAGGATCTACATTGCACATCTTAAAGAAAGTGTGGCCAGAACCTGCGGTCAAGCCAGAACCAGTGAACAGAAGTGCTGCAGCGAGAGAGTTTAGACTGCTTCAGGCTGCCATGCACTCCAGTGCTGCGTACAGAGAGGCAGTGTTTAAGATGCTGAGCAATAAGGAGTCTCTGGATCAGATCATAGTGGCCTCCCCTGGGCTCAGCTCAGACCCTGTCGCATTGGGTGTTCTACAAGATAAGGATTTGTTTGTGCAGTTCACAGACCCCAATCTgcttgatgtGTTGGTCCGATCTCATCCAGCGCTGGTTAATGCCATCATTCTGATCCTCCACTCTGTGACGAGCAGCATGCCTGGCCAATCAAATGCAAGCTCCTCCCACAATGCCCCTGCTAGTTCCTACAGTGAAATGCCAGGAGGATTTATGTTTGAGGGCATgtctgatgatgaagatgatttcCAATCcGGAAGTCGTGCAGGCTCATCCCAGCGGCCGAGACCTCCAACCAATCTGAGCAGCGGCGGAGCTACAGGGCCTCGACCTATCACTCAGAGTGAGCTAGCTACAGCGCTAGCTCTGGCTAATACACCAGACAGCAGTGCAGTCACACCCATTCTGGGCAGCCAAgacgTGTCCACTGGCAgttcttcagcagcagcagggaCTCCTGTCACTAGCAGTGTGTTGAGTCGGGCACTACAGCAGGCTCTGGAGGCTTCTGGGGTGACCCCTCTGcagGGGCGCTGGCAGACGCAGATGCAGCAGCTGAGAGATATGGGCATCAGAGACGAAGAGCTGGCATTACGAGCCCTCCAGGCTACAGACGGAGACTTGCAAGCAGCACTCGAGCTCATTTTtgctggaggaggaggactCTGAGGCCTAGAGGTCTAAGGATGGAGGAAACTTTTACATTAAAAACTTTAGATATTACATCTGTaatacatcattttttaaattttttggaAATTAGTACTAAATAAATGGAACAAAGTACTGGAA

Function

NR:

description
PREDICTED: ubiquitin-like protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914047.2 False 1373 mRNA 0.50 11 26303145 26311502
XM_026914049.2 False 1369 mRNA 0.51 11 26303120 26311502
XM_034305023.1 True 1434 mRNA 0.47 11 26303332 26311502

Neighbor

gene id symbol gene type direction distance location
insyn1 c4h15orf59 coding upstream 219847 26009102 ~ 26083273 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding upstream 424920 25872482 ~ 25878200 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding upstream 463831 25788638 ~ 25839289 (+)
dusp8b LOC108264845 coding upstream 525614 25767418 ~ 25777506 (+)
yif1b yif1b coding upstream 1020900 25268893 ~ 25282220 (+)
chrnb4 chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347 coding downstream 242966 26554468 ~ 26565211 (+)
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding downstream 257093 26568595 ~ 26578544 (+)
LOC113526907 LOC108264702 coding downstream 303320 26614822 ~ 26622142 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding downstream 310944 26622446 ~ 26634497 (+)
LOC113526591 NA coding downstream 324907 26636409 ~ 26644829 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding upstream 397832 25903826 ~ 25905288 (+)
LOC117597584 NA non-coding upstream 960812 25340623 ~ 25342308 (+)
G104751 NA non-coding upstream 1057255 25245664 ~ 25245865 (+)
G104748 NA non-coding upstream 1059242 25243481 ~ 25243878 (+)
G104739 NA non-coding upstream 1059815 25242800 ~ 25243305 (+)
G105320 NA non-coding downstream 8507 26320009 ~ 26323500 (+)
G105446 NA non-coding downstream 201934 26513436 ~ 26516780 (+)
G105450 NA non-coding downstream 214418 26525920 ~ 26527807 (+)
G105449 NA non-coding downstream 219833 26531335 ~ 26532088 (+)
G105479 LOC108264702 non-coding downstream 299439 26610941 ~ 26611260 (+)
G104781 NA other upstream 987907 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1062907 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2540075 23739502 ~ 23763045 (+)
G103830 NA other upstream 2673397 23615103 ~ 23629723 (+)
serp1 NA other upstream 2727407 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 519476 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 899887 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 1214621 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1633288 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1755380 28066882 ~ 28070685 (+)

Expression


Co-expression Network