gas8 (gas8,LOC108276428)


Basic Information

Item Value
gene id gas8
gene name gas8,LOC108276428
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28206753 ~ 28215082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914070.2
ATTTGTCTTCTCGCGAGATTTGGATCTTCTGTTGCCATGACGCCGTGTTGTTGTATGACGACCCCGAGCTGCTCAGCTACACAGCGTCTTGACGATATTTAGCTAATTAAAACAACATCATGCCTCCGAAAAAGAAAGGCACAAAGTCTGCTAAGGGAAAGAGCAGTACTGTAGTGGATGGACTTTCTACAGAAGACATGTCGAAGGAGCAGCTGGAAGAACACATTATCCGGCTGCGTGAGGAGCTGGACCGGGAGCGAGAAGAGCGCAATTACTTCCAGCTCGAAAGAGATAAGATACACACCTTTTGGGAGATCACCAAAAGACAACTAGAGGAGAAGAAAGCTGACCTAAGGAACAGAGACCGAGAAATGGAAGAAGCTGAAGAGAACCATCAAACTGAAATCAGGGTGTACAAGCAGAAGGTTAAACACTTGCTGTATGAACAGCAAAACGGCATTACCGAGCTTAAGACAGAGGCAGTGGTTGCCACCAAACTCCTGGAGAAAGAGCAGGCAGACCTGGAGAACGAGCTGCGGAGAGGCGTGCGCAGCCTGAAAGTGGACCTGAAAGAACAGGAGCTCTCCAACGAGAACTACATCAAGAACCTAAAACTGAGCCATGATaaggaaatcaccaaactgagAAGTGAATTTGAGGAAAAAGTACGAGAAATCGAGGCTAAATATGAGAAGAAGATGCAAAAACAGCGACAGGAGCAAGACCTGAGGCGCAAGACTGAAATCCATGAGATCGAGcaaaggaagaacatccacattAACACGCTGATAAAGAACCACGAGAAAGCGTTCAGTGATATTAAGAACTATTACAGTGATATCACTCTCGGGAGCTTCAACCAAATCAGCTCGCTTAAGGAGCAAGTGGCtgacatgaagaagaaggaggagaggtTGGAGAAGGAGATGGCCGAGGTGCTGCAGCAGAACAAGCGTTTGACGGAGCCGCTGCAGAAAGCCACGCAGGAagtgtcagagctgcagaaACAGCTCTCCAACTATAATAAGGACAAAGCCTTACTGGCAGGAGTGAAAGCACGTCTCAAAGTGGCAGATAAAGAGCTGAAGGACCTGAAATGGGAGCATGAAGTGCTGGAGCAGAGATTCAgtaagGTGCAGCAGGAGCGAGATGAACTGTACCAGAAGTTCACCAAGGCCATCCTGGAGGTGCAGCAGAAGAGCGGCTTTAAGAACCTGCTTCTGGAGAGGAAACTGGAAGCTCTTACAGACACCCTGGAGAAGAAAGAGGCACAGCTCAATGAGGTCCTTGCTGCCTCTAATTTAGAGCCCAGCGCCCTGAACGTGGTCACTCGCAAACTGGAGgaAGTGTTGGACTCGAAAAACGTTGCTATTAAAGACCTGCAGTATGAACTGGCTCGCATGTGTAAGGCGCATAACGACCTGCTGAGGACGTATGAGGCGAAACTGAAGGCTTTCGGGATCCCTGTGGATGAACTGGGCTTTAAACCACTGGAGAGCAGCTTAGTGAAGCAGACCCTAGGTCAGGGACCAGCCGGCCTGGTGTCTGCCCCGCTCTAACCTCACTGCCTTAAACATGTACTTTCACATCAGCCATAATGCCCTGGGactcgtctcatattcatcctacaacaacaacaacaacaacaacaaaaatgctgctatgtctcgctctctcactttctcttttatGAAAGAAGGAATTCTAAATCAGTCCCAataaatattttggaaaaagaaatacTTTACTGTTCTAACACCTGTTTACttaccactttattaggaacaccatacaAAGGGATGCACAAGGTCAGTAACAATATTTAGATGCACTTGCATTCAAGCTGTAAGCTGTGGCAGTCATACGGTCCTCGATTGGTATTAAATGCCCCAGTGTGGGCGAAGAAAACACTCCCCAcgccattacaccaccaccaccagcctgaactgttgacacggGGCAGGTTGGGTCCGTGGATTCATGCTGACCCTATTTCTTTCAGAAGAACATCCTCTAAAGTCACTGACTTATGTGCAACGTTTCaacatgtaataatgtaaaGCTGAAATAATGTGTGGATTTATGGTATTTGTGTAGGTATCAGTTGACGATGCATGTGAATAAGTCTAATGGATGATTTAAGCCATCATTTCTTCTCtggattttattataattacagtaaCTGAAGCAGGAAAAAGTTTCATTAAAGCATTTCTGGTATTTTA

Function

symbol description
gas8 Predicted to enable microtubule binding activity. Involved in cilium movement involved in otolith formation and otolith tethering. Acts upstream of or within muscle cell development and positive regulation of smoothened signaling pathway. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be active in Golgi apparatus and microtubule. Is expressed in neural tube; otic placode; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 33. Orthologous to human GAS8 (growth arrest specific 8).

NR:

description
growth arrest-specific protein 8

GO:

id name namespace
GO:0055001 muscle cell development biological_process
GO:0048870 cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0031514 motile cilium cellular_component

KEGG:

id description
K19942 GAS8; growth arrest-specific protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914070.2 True 2225 mRNA 0.46 11 28206753 28215082

Neighbor

gene id symbol gene type direction distance location
LOC113526563 LOC108264624 coding upstream 25550 28163685 ~ 28181203 (+)
LOC113526844 tubb3,tbb3,LOC108431516,LOC107552791 coding upstream 65021 28133842 ~ 28141732 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding upstream 82833 28119024 ~ 28123920 (+)
tcf25 tcf25,LOC106562269 coding upstream 91792 28098396 ~ 28114961 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding upstream 110927 28089378 ~ 28095826 (+)
mthfsd mthfsd coding downstream 705 28215787 ~ 28223504 (+)
emc8 emc8,LOC106587369 coding downstream 237978 28453060 ~ 28460177 (+)
gins2 gins2,psf2 coding downstream 246747 28461829 ~ 28467750 (+)
cibar2 fam92b,LOC108442585 coding downstream 526953 28742035 ~ 28750741 (+)
si:ch73-103b9.2 c4h16orf46 coding downstream 559239 28774321 ~ 28778017 (+)
G106343 NA non-coding upstream 108752 28097729 ~ 28098001 (+)
G106118 NA non-coding upstream 477592 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 604019 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 708123 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 972529 27229784 ~ 27234224 (+)
LOC117597547 NA non-coding downstream 18725 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 175116 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 214921 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 354388 28569470 ~ 28571760 (+)
G106527 NA non-coding downstream 357597 28572679 ~ 28573466 (+)
def8 def8 other upstream 44884 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 136068 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 240445 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 661227 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 992183 27211389 ~ 27214570 (+)
cmc2 cmc2,LOC107711752 other downstream 584382 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2179178 30394260 ~ 30498315 (+)

Expression


Co-expression Network