treh (treh)


Basic Information

Item Value
gene id treh
gene name treh
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20097695 ~ 20115417 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914098.2
TTTGCTACTCCATGGAGTTGCACAGCAGACACACTTGAAAGATTGTTTCTGGCTGAAGAATTCATAGTTTAATAGAATGTTCTGGCTATCTGGGGGGatcacctttctttttttatgtcatgGAGCTGCTCTTCCTCCACCTTGTGACAGTGAGATCTACTGCACAGGAGAGCTGTTAAGACAGGTACAGATGGCCAAACTGTTTGATGACAACAAGGCCTTTGTGGATATGAAATTGACTGCAGCACCTGATATTGTTTTAGATGCCTTCTCCAACCTAACACAAAAGTTTCCAAATGGGACTGTTCCTCATTCAGCTCTACAAGAGTTTGTGAATACGTACTTTGCGAATAGTGGGAAAGAGTTTGAACCGTGGAGTCCTCCAGACTGGCATGACAAACCAAAATTGCTGTCCAAGATATCTGACGCAAAACTTCGCAGCTGGGCTGAGGAGTTGCACGGTTTGTGGAAATCACTTGGCCGAAAGATCAGTAATGATGTGAGAGACAATCCTCAAATGTATTCTATGATATACTGTCCATATCCAGGCATTGTACCAGGCGGACGCTTCACTGAGTTTTACTACTGGGACTCATATTGGGTGCTAAATGGTCTCATATTATCTGAAATGATGGAAACAGCCAAAGGAATGATCCAAAACTTCCTACACATGGTGGACAGGTATGGTTTTGTACCAAATGGAGGGAGAATTTACTATGAGCGACGCAGCCAGCCACCCTTCCTACCACTAATGGTGGAGAGTTACTATGAGGCCACTAAAGACGTAGAATTTCTCAGAAAGGCTTTACCGTTGTTGGAAAATGAGTACAGTTTTTGGATGGGGAAACGCTCCATTGTCGTGGAAGTGAATAGCGTCAAGCATGTCATGAATCGTTATTATGTACAAGTCGGTCAGCCCAGGCCAGAATCTTATACACATGATGCAGAGCTGGCAGAGGGCTTACCTGCAGAGGCTCAGGAGAAGCTGTGGACAGAACTGAAAGCAGGAGCCGAGTCTGGTTGGGATTTTTCCTCACGCTGGTACATTAACAACTTGGGCCAAAACAATGGCTCATTCGGGGACACGAGGACCAGCTCCATCGTGCCTGTCGACCTCAATGCTCTCATTTGTCGCAATGAGCGTGTCCTGGCCACCTTCCACAGAATTCTGGGTGATGAGGAAAGGGCACGTGTATATGACAGTGCAGTCTCTTTGAGGCTGAAGGCTATAGAGAGTGTTCTATGGGATGCAGAGAAAGGAGCGTGGTTTGATTATAACTTGTTGAGTGGGACCAGGAATTCAGCCTTCTATCCAACTAACCTAAGTCCTCTCTGGGCACGGTGTTATTCTCAGCCTGAGATGGGACAGCAGGCACTACAGTATCTCAGAGGGAGTGGTGCGCTGGACTACCCCAATGGTGTTCCCACCTCTCTGAGTCAGAGTGGCCAGCAATGGGACATGCCTAATGCCTGGCCTCCACTCCAGCACATGCTCATAGAGGGTCTGTCACAGCTTGACTCGACAGATGCCAAAGATCTTGCCTCTGATTTGGCTCAACAGTGGATTCATACAAATTGGCTGGCTTATGTTAAATATGATGCCATGTTTGAAAAGTATGATGTCAGTGGAGATGGCAAACCCGGAGGAGGTGGTGAATATGAAGTTCAGCTGGGGTTTGGATGGACAAATGGTGCTGCTCTACAGCTGCTGGACCAGTATGGAAATAAGCTGACCTCTGGGGGAAGTGTCCTAGGTTCTGGCCTTCAGATTGGACTAATTTACCCAAttgtaaatgccatattttacTATGCACCATTCTGGTAGTTATATTTGGAAAAAGGACATCTTGGATATTAGAATTTTAGAATTCCATTGAAGTCAATATGCTTGTTTGCTCTGGTTGTCTTGAATAGTCATTGCAATAACTCTATTGTGTTAGGACTGCAAGATTATCATTACAACTCTTAAAAAGCTATCACTACAAATCCGGtgatcaaaataaatgaaaatcatgGTGTATTTTAGCATTA
>XM_026914100.2
TTTGCTACTCCATGGAGTTGCACAGCAGACACACTTGAAAGATTGTTTCTGGCTGAAGAATTCATAGTTTAATAGAATGTTCTGGCTATCTGGGGGGatcacctttctttttttatgtcatgGAGCTGCTCTTCCTCCACCTTGTGACAGTGAGATCTACTGCACAGGAGAGCTGTTAAGACAGGTACAGATGGCCAAACTGTTTGATGACAACAAGGCCTTTGTGGATATGAAATTGACTGCAGCACCTGATATTGTTTTAGATGCCTTCTCCAACCTAACACAAAAGTTTCCAAATGGGACTGTTCCTCATTCAGCTCTACAAGAGTTTGTGAATACGTACTTTGCGAATAGTGGGAAAGAGTTTGAACCGTGGAGTCCTCCAGACTGGCATGACAAACCAAAATTGCTGTCCAAGATATCTGACGCAAAACTTCGCAGCTGGGCTGAGGAGTTGCACGGTTTGTGGAAATCACTTGGCCGAAAGATCAGTAATGATGTGAGAGACAATCCTCAAATGTATTCTATGATATACTGTCCATATCCAGGCATTGTACCAGGCGGACGCTTCACTGAGTTTTACTACTGGGACTCATATTGGGTGCTAAATGGTCTCATATTATCTGAAATGATGGAAACAGCCAAAGGAATGATCCAAAACTTCCTACACATGGTGGACAGGTATGGTTTTGTACCAAATGGAGGGAGAATTTACTATGAGCGACGCAGCCAGCCACCCTTCCTACCACTAATGGTGGAGAGTTACTATGAGGCCACTAAAGACGTAGAATTTCTCAGAAAGGCTTTACCGTTGTTGGAAAATGAGTACAGTTTTTGGATGGGGAAACGCTCCATTGTCGTGGAAGTGAATAGCGTCAAGCATGTCATGAATCGTTATTATGTACAAGTCGGTCAGCCCAGGCCAGAATCTTATACACATGATGCAGAGCTGGCAGAGGGCTTACCTGCAGAGGCTCAGGAGAAGCTGTGGACAGAACTGAAAGCAGGAGCCGAGTCTGGTTGGGATTTTTCCTCACGCTGGTACATTAACAACTTGGGCCAAAACAATGGCTCATTCGGGGACACGAGGACCAGCTCCATCGTGCCTGTCGACCTCAATGCTCTCATTTGTCGCAATGAGCGTGTCCTGGCCACCTTCCACAGAATTCTGGGTGATGAGGAAAGGGCACGTGTATATGACAGTGCAGTCTCTTTGAGGCTGAAGGCTATAGAGAGTGTTCTATGGGATGCAGAGAAAGGAGCGTGGTTTGATTATAACTTGTTGAGTGGGACCAGGAATTCAGCCTTCTATCCAACTAACCTAAGTCCTCTCTGGGCACGGTGTTATTCTCAGCCTGAGATGGGACAGCAGGCACTACAGTATCTCAGAGTCTGTCACAGCTTGACTCGACAGATGCCAAAGATCTTGCCTCTGATTTGGCTCAACAGTGGATTCATACAAATTGGCTGGCTTATGTTAAATATGATGCCATGTTTGAAAAGTATGATGTCAGTGGAGATGGCAAACCCGGAGGAGGTGGTGAATATGAAGTTCAGCTGGGGTTTGGATGGACAAATGGTGCTGCTCTACAGCTGCTGGACCAGTATGGAAATAAGCTGACCTCTGGGGGAAGTGTCCTAGGTTCTGGCCTTCAGATTGGACTAATTTACCCAAttgtaaatgccatattttacTATGCACCATTCTGGTAGTTATATTTGGAAAAAGGACATCTTGGATATTAGAATTTTAGAATTCCATTGAAGTCAATATGCTTGTTTGCTCTGGTTGTCTTGAATAGTCATTGCAATAACTCTATTGTGTTAGGACTGCAAGATTATCATTACAACTCTTAAAAAGCTATCACTACAAATCCGGtgatcaaaataaatgaaaatcatgGTGTATTTTAGCATTA

Function

symbol description
treh Predicted to enable alpha,alpha-trehalase activity. Predicted to act upstream of or within trehalose metabolic process. Orthologous to human TREH (trehalase).

NR:

description
trehalase

GO: NA

KEGG:

id description
K01194 TREH, treA, treF; alpha,alpha-trehalase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914098.2 True 2031 mRNA 0.45 15 20097695 20115417
XM_026914100.2 False 1919 mRNA 0.44 14 20097695 20115417

Neighbor

gene id symbol gene type direction distance location
si:ch211-151h10.2 LOC108264443 coding upstream 251858 19835533 ~ 19845837 (+)
prdm10 prdm10 coding upstream 262266 19801828 ~ 19835429 (+)
LOC113526906 LOC108264037 coding upstream 309803 19782594 ~ 19787892 (+)
aplp2 aplp2 coding upstream 324253 19682060 ~ 19773442 (+)
st14a st14 coding upstream 436704 19635451 ~ 19660991 (+)
ttc36 ttc36 coding downstream 242796 20358213 ~ 20360195 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 457864 20573281 ~ 20630604 (+)
dner dner coding downstream 519611 20635028 ~ 20657916 (+)
sphkap sphkap coding downstream 658187 20773604 ~ 20819328 (+)
foxa3 foxa3 coding downstream 745365 20860782 ~ 20864194 (+)
G102124 NA non-coding upstream 42463 20055032 ~ 20055232 (+)
G102108 NA non-coding upstream 98021 19999392 ~ 19999674 (+)
G102106 NA non-coding upstream 99612 19997871 ~ 19998083 (+)
G102098 NA non-coding upstream 114548 19982947 ~ 19983147 (+)
G102089 NA non-coding upstream 125576 19971693 ~ 19972119 (+)
G102285 NA non-coding downstream 280450 20395867 ~ 20399958 (+)
G102286 LOC107557830 non-coding downstream 306604 20422021 ~ 20464632 (+)
G102325 NA non-coding downstream 357925 20473342 ~ 20473737 (+)
G102327 NA non-coding downstream 360387 20475804 ~ 20476171 (+)
G102370 NA non-coding downstream 463201 20578618 ~ 20581945 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 4763 20076965 ~ 20092932 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 44553 20004356 ~ 20053142 (+)
cdon cdon other upstream 127908 19920049 ~ 19969787 (+)
G101602 NA other upstream 973818 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 975198 18957428 ~ 19122497 (+)
pid1 pid1 other downstream 523343 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 729257 20844674 ~ 20849338 (+)
prx NA other downstream 823996 20939413 ~ 20967271 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 910610 21026027 ~ 21102216 (+)
zbbx zbbx other downstream 1647030 21762447 ~ 21813210 (+)

Expression


Co-expression Network