nob1 (nob1)


Basic Information

Item Value
gene id nob1
gene name nob1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27846818 ~ 27854765 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914112.2
TCAGGAGGTCTCGTGATGAGTTCTCGCGAGATTTGCTGTAGGTTGGGCTGCTGATTGGGGCATGCGTTCAAGATGGTGGCCAGCATGGTGGAGCATGTTGTAGCCGACGCGGGGGCTTTTTTGAAAAACGCCGCTTTGCATGAAATTGGGAAGAACATCTACACGCTGAAGGATGTCGTGAATGAAATTCGGGACAAACAAACGAAAAAGAACTTGGCGTTTTTACCCTACAAGCTCAACTTCAAAGAACCTTTTCCGGAACACGTCCGATTCGTGACGGAGTTTGCCAAAAAGACCGGAGATTATCCCAGCCTGTCAGCTACAGACATTAAGGTCTTGGCTCTGACCTACCAGCTGGAGCTGGAGAACTGTGGAGCTGCTCATTTGAAGAAAGAACCAGCAGTACAgGTGGAAGTAcgcagcacacagagacacccAGAAGCTCCAGTTAATATCGCTGGGTTCCACCTTCCCTCTAAAAAATCCTCAGCCGGCTCAGTGACTGTCGTTCAGCAGCCTGTAGCATCACAAGAACATCCAGATGCCGAGAGCTCCGAGTTTAACAGCTTCCAGTTTTGGAGAGATCCCTTACCCAGCATTGACGATGACTTACTGAAACTGGTGGAATCCTCACCCAGCTCAGTCACTGCTGTTCAGCATGATGCCGCGTCACGTGAGCCTCAGACTGCCGAGAGCTCGGCGTTTAACAGCTTCCAGTTTTGGAGAGAACCCTTACCCAGCATCGATGATGAGTTATTAAAGTTGGTGGACATCACGGAGAAAGTGCAGAGTGTGGCTCTGACGTCTCCGAGCGCTGAACACGAGGATGATGTTGGTGTGGAGGAGGGAGAGGGcgaggatgaagaggatgacGACGGCGGCGGCGGCTGGATCACTCCcagtaatataaaacaaatccaGATGGATGCTGGCGAATGGTGTCCAGTGGAGAACGTCACAGTGGGCTGCATGACCACCGACTTTGCAATGCAGAACGTGCTCATTCAGATCGGCCTCAACGTGCTGTCTGTGAACGGCATGCTCATCAAACACACGAGAAACTACATCCTCCGCTGCCACGCCTGCTTCAAGACTACAACAAATATGAACAAAGTTTTCTGTCCACATTGTGGCAACAACACGCTGAAGAAGGTGGCAGTGACGCTCCGAGAGGACGGCGGCATGCAGATGCACTTCTCCAGCAACCCCAAAGTGCTCAATCCCAAAGGAAAGAGGTATGCTATTCCTTTCCCACAAGGTGGCAAACACTCAAACAACCCACTTCTGGTGGAGGATCAGCGTTTCCCTCAGCAGCGACTCTCTCGAAAGGCACGGGCCAAGACGGACGTGTTTGACCCGGACTACCTCGCCGGCAGCTCTCCGTTCTCAGAGCACGACATTTACAGCCGAGCGGCGAGTTTACACCTGCGGGACGCTCAGTGTGGAGGAGGGAGACGACGCGCTAACCCAAACGCCTCTCGCAAGAAATTCGTCAAGAAAAAGTGAATCAGCGGTACTGTGTTAACTATATAACGGTGTTAAGGGCAGAGATcgagaaaggaaaaataaaccATTACTCGTTCCTAGGAAAAACagtcacattttaaataattaatacaacAGGAACTGACGTGTGCTTAAATTCTACTAAGGATGCATGGATACATTTGCTCGTGATACATTAGGCTTATGTTACATGGTATGTTGTAGCACTAAGcaacagacaacacaaaatCTGGACGTAGTTCACAATTAAAGCAAATCAagctgcaaactgtgctctgtgaaaatatcaagtgGCAGAACTagagcatcttcctacaatacaattAACCTGACAAAGCATCATACAGTGTTTAAatagtatctttaatagagcgCATGACCTGAGCACACGAGTGTGGACATTAAAAACGAGCCCAAGTTGCCatgaactgcacacacacaaattgaaGTGAGGGTACAGAGAAACTGTGGAACACGAGAGcagttcagttctgcgagcactgagacacgcaCGGTTCCTTTCAGCAGCATCTTCACTTTGTACCTTGCGCTCATTTTTAACGGCCACGCTCGCTGATCctgctctacacacactcagactggCCACCCATACACTCTCTAAAGATACTGCTTAAGCATCGTaacaacatttaaacataaaactcagcatgaaaAGGTCATTGCTAGCATCACACGgcagcaaccaacataaacagagctacaATAATGGGTCCAATGACGCCCCTGATTACTAAATACTAAGCACGTTACTGATTTCAGTACTCTGCTCTTAttctgtctggaaaaaaaaaatggtatagGTGCATCCCTAAAGTCTACATTTTCCTGCCCTTTGTatgtcagattaaaaaaaaactgtggcaTTTGATGGACAAAAATGATTGAGAACCCCTTTGTATTCATCACATA

Function

symbol description
nob1 Predicted to enable endoribonuclease activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within cleavage involved in rRNA processing and ribosomal small subunit biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, small subunit precursor. Orthologous to human NOB1 (NIN1 (RPN12) binding protein 1 homolog).

NR:

description
PREDICTED: RNA-binding protein NOB1-like, partial

GO: NA

KEGG:

id description
K11883 NOB1; RNA-binding protein NOB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914112.2 True 2436 mRNA 0.48 10 27846818 27854765

Neighbor

gene id symbol gene type direction distance location
gcsha gcsh,LOC108421035 coding upstream 133248 27710176 ~ 27713570 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding upstream 246249 27558440 ~ 27600569 (+)
trnal-caa_9 NA coding upstream 286321 27560387 ~ 27560497 (+)
trnal-caa_8 NA coding upstream 287872 27558836 ~ 27558946 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding upstream 718405 27120185 ~ 27128413 (+)
nip7 nip7 coding downstream 5263 27860028 ~ 27863418 (+)
LOC113526868 rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858 coding downstream 34996 27889761 ~ 27891260 (+)
pdpr pdpr coding downstream 48006 27902771 ~ 27918148 (+)
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding downstream 135799 27990564 ~ 28063149 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding downstream 216919 28071684 ~ 28078887 (+)
G106118 NA non-coding upstream 117657 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 244084 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 348188 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 612594 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 701787 27141845 ~ 27145031 (+)
G106343 NA non-coding downstream 242964 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 379042 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 535433 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 575238 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 714705 28569470 ~ 28571760 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 301292 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 632248 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1013391 26830978 ~ 26833427 (+)
G104781 NA other upstream 2531605 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 2606605 25233625 ~ 25240213 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 90025 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 212117 28066882 ~ 28070685 (+)
def8 def8 other downstream 291498 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 944699 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2539495 30394260 ~ 30498315 (+)

Expression


Co-expression Network