polr2i (polr2i,rpb9)


Basic Information

Item Value
gene id polr2i
gene name polr2i,rpb9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20480826 ~ 20484801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914140.2
CGCATGCGCAGTATTGTCGCGGCTGTTTTCACCAGCGCTGGTGCAGTGGTGTTGAGTCTTTTCTTCGCGGTATTATCCAGTTGCAATAAGGTGTCTATGGATTTGGAAAGCGGCGCGTGTGAGCCAGGCTTCGTCGGGATCAGGTTCTGTCAGGAATGTAACAACATGCTGTATCCAAAAGAGGACAAAGAGAACCGCATCCTCCTCTACGCTTGCAGGAACTGTGATTATCAGCAGGAAGCCGATAACAGCTGCATCTATGTGAACAAAATCACACACGAAGTTGACGAGCTCACACAGATAATTGCTGATGTGTCTCAAGATCCAACACTGCCTCGTACCGAAGATCATCCATGCCCTAAATGTGGCCACAAGGAGGCAGTGTTCTTCCAGTCACACAGCATGAAGGCTGAGgATGCAATGAGGCTGTACTACGTGTGTACGGCTCCACACTGTGGACACAGGTGGACAGAGTGAAGGAGAGGTGGAGAGACTCACTCGCCTAATTTGTTATTAAGGCTAACGAGATACAGCTGCTTCAGTGTGGAGTGAATCTTCATTagctgagctgtgtgtttgtgtattcagAGGActgagtcgtgtgtgtgtgtgtgtgtgtataaaataatgGATGCTTATagtgtttttcttattaaatattttttaaagattttatgatttttgagTTTTATGTGAAATAAGTATGTACCAAAGAGACAtagtaaaattaaatgtttcatttttaa

Function

symbol description
polr2i Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within mRNA cleavage and transcription, DNA-templated. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).
rpb9 Contributes to RNA-directed 5'-3' RNA polymerase activity. Involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

NR:

description
DNA-directed RNA polymerase II subunit RPB9

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914140.2 True 746 mRNA 0.44 6 20480826 20484801

Neighbor

gene id symbol gene type direction distance location
pglyrp5 LOC108264553 coding downstream 4556 20473179 ~ 20476270 (-)
foxg1c NA coding downstream 9737 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 16141 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 27679 20422273 ~ 20453147 (-)
ccnp NA coding downstream 91193 20382810 ~ 20389633 (-)
rasa2 rasa2,LOC108264552 coding upstream 4739 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 56842 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 81939 20566740 ~ 20572429 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 336005 20820806 ~ 20845204 (-)
LOC113526481 NA coding upstream 440177 20924978 ~ 20929950 (-)
G102449 NA non-coding downstream 2270 20478333 ~ 20478556 (-)
G102444 NA non-coding downstream 8081 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 121285 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 124229 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 189835 20244335 ~ 20290991 (-)
G102453 NA non-coding upstream 9456 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 93889 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 154070 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 510724 20995525 ~ 21003780 (-)
G102691 shkbp1 non-coding upstream 638514 21123315 ~ 21124955 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 64252 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 500567 19980069 ~ 19980259 (-)
G101178 NA other downstream 2284020 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5123263 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6133818 14335936 ~ 14347008 (-)
G102566 NA other upstream 468801 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 510540 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1746647 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3106144 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3163883 23648684 ~ 23699707 (-)

Expression


Co-expression Network