zgc:162879


Basic Information

Item Value
gene id zgc:162879
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19159986 ~ 19239977 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914191.2
GGCGAAGCCTTTTTCCACGCCCTCATTCATCGTTAGCCAATCGCTTTTTAGAGCCCAATGATGCGTGGCCGTAATAATTGGTCAGTCCTTGTCGGAaaggtttaaatgttttattcatctttgcATTGCTGTcattgaaaagaaaagaaacgaGCATTGTTACCGCTCTTACTGAGGGGCTTTCGATATCCGGCATGTCAGATTTTTAAGAGTTAAATACATGGATACCTCAGATCTTCACAAGTTGTTTTCCGCCTGTGATGGAAACAAATCGGGAAGAATCGAGTACGAGGATTTCACTAAAGTTTGCCGAGAGCTCATTGTTCCGGGTGGTGAGATAAGGTCTTTGTTCAAAAAGTTTGACGTGGACGGAGACGGGTGTATTAATTACAACGATTTTTGTTCGCGCTTCCATGAAGCGTCCGGAAGTATGAATCTGGCCTCGTTGGACCACAGTGGAGAGAGGCGGGCGAGTGCTTGGGATGAGTTTGAAAATACTTTGGACGGAGATGTGGCCTACTATTTGGGCAGCTTATGGGATCCCTTGAGTGAGTTGTACCAGCAGATTCATGCCACTTGTGACAAGCTTCTGCTGCAGCAGTATGAAGATCTGATCAAAGCTGTAGTGGTGGAGAGCAAAGAACATCAGTTGGAGACTGACCAATTAGAGTCCAGTCTGAGATGGGCAGAGGAGATGATGAGCACTCAATTGTCAGAGATGGAAGAGGATTTACAGCAGCAGCTAAGTTACAAAGAGTTGACGGTCCAAGAGGAGGAGCAAAAGAAAATGGAAGGGGCCATTGAGTTGCTCCAGCTAAAGCATGAGAATGAATTGCTGGACCTACAATCAGCAGTAGAGAAGCTTACACAGTATCAAGAAGAGACAGAGTTGACCAGCCCCAGAGAAGATGTCATCAAATTAAGAAGGAAAATCCAAGAGGTTACTCAGGAGAATGAGGAGTTCAGGAAATCTCTCTTGAAGGCTCAAATGACCATTTCTGTCCTGCAGGTAGAGTTGGACAAACTTAAAAATGCATACGTTGATGAGAAGCTTCAGCATGAAAGTGAAAGTAATGAACTGAAAAAGATGGTGATCCAGTACCAGTCTTACACCGAACATTTTGAAATGCTCCAGGAAATGAATAAGAAGTTGTATGACAGCAATGATGATTTACAGTCTGCTCTTGCTAAAGACACTGTTTGTTCCAAAAGGCAGCTTTCCTCAAAAAACAAAAGGCCACCCAGAAAACTGAAGCCACTACGACAGAGTACAATAAATCAGAGCAGCTTTGCTAATGAGGAGGACAGCATGATTGTAGTTCCTTCCAAAGAGAAATTCTCACTTGTGGAGCATTGGGCAGATAAGTATCTAGACAGCGGCGTTTCcttacagacagacacagacaggcTGCTAGGCTCCAATTATGATAGTGATGAGAGCCACGATTCTGAAGAGACTACACACCACAGCTGTTCATATGTTCCGTCTGAAATGGAGATGTCAGATTTGAAATCTGAGATGAATTTGTCAGTGAATCCAAGCAGAGTCGGCTTGTTAACCTCATCTCTGAGACGTCGGCTGTCAGCTTTTCCTGCAAAGCAAGCTGAAGTTGAAGTGATTGATTCTGATGGTTCTGTTCCAATGTACCGCTTGGTGCTGGCAGGGGACGCAGGGTCTGGAAAATCCAGCTTTTTACTGCGTCTCAGTCTAAATGAGTTCAGAGGAGAGATGCAGACCACACTGGGAGTCGATTTTCAAATGAAGAAGATGCTTGTGGATGGAGAAAAGACAAACCTTCAGATATGGGACACTGCTGGGCAGGAAAGGTTCCGCAGTATTGCCAGATCGTACTTCCGCAAAGCACATGGTGTGCTGCTTCTCTATGACGTTACTTCAGAGAACAGTTTCTTGAATGTTCGAGAGTGGATTGAGCAGATTCAGGAATCCACAGATGGCAGCGTCCCCTTGTGTTTAATTGGGAATAAAGTGGACCTGAGAGTGGTGAGGGGAGTGGAGAGCTGTGTGAGTCCTGCCCATGGCGAGAAGCTTGCTAGGACTTACAATGCCTTGTTCTGTGAGACGAGTGCCAAAGAGGGTACCAATGTAGTGGAGGCAGTTCTGCATTTAGCAAGagagataaagaaacaTACCAAACTGAGAAAGCAGACAGAGTCCCAAGTTAAGTTGACTCTAAACAGTGGAAAAAAGGCACTGAGTAACTGCTGTGGAGTTTAACTGTGACTGCTCATCACACAGCAAAAACACATGAAGGACAGAGCTTAATATGCACGTAATTCACACATTATTGTCAGATCCACTGTCTCACAATGTTCATGTCTTGGAGAAAATATCAGAAGTGACATTTAAGTGTTTtgagttttttatatatatatatatatataacacacacactcacccgtccactttaataggaacgcCTATACACCTGC
>XM_026914192.2
TGCCTGCTGGAGGCGAAGCCTTTTTCCACGCCCTCATTCATCGTTAGCCAATCGCTTTTTAGAGCCCAATGATGCGTGGCCGTAATAATTGGTCAGTCCTTGTCGGAaaggtttaaatgttttattcatctttgcATTGCTGTcattgaaaagaaaagaaacgaGCATTGTTACCGCTCTTACTGAGGGGCTTTCGATATCCGGCATGTCAGATTTTTAAGAGTTAAATACATGGATACCTCAGATCTTCACAAGTTGTTTTCCGCCTGTGATGGAAACAAATCGGGAAGAATCGAGTACGAGGATTTCACTAAAGTTTGCCGAGAGCTCATTGTTCCGGGTGGTGAGATAAGGTCTTTGTTCAAAAAGTTTGACGTGGACGGAGACGGGTGTATTAATTACAACGATTTTTGTTCGCGCTTCCATGAAGCGTCCGGAAGTATGAATCTGGCCTCGTTGGACCACAGTGGAGAGAGGCGGGCGAGTGCTTGGGATGAGTTTGAAAATACTTTGGACGGAGATGTGGCCTACTATTTGGGCAGGGCAGAGGAGATGATGAGCACTCAATTGTCAGAGATGGAAGAGGATTTACAGCAGCAGCTAAGTTACAAAGAGTTGACGGTCCAAGAGGAGGAGCAAAAGAAAATGGAAGGGGCCATTGAGTTGCTCCAGCTAAAGCATGAGAATGAATTGCTGGACCTACAATCAGCAGTAGAGAAGCTTACACAGTATCAAGAAGAGACAGAGTTGACCAGCCCCAGAGAAGATGTCATCAAATTAAGAAGGAAAATCCAAGAGGTTACTCAGGAGAATGAGGAGTTCAGGAAATCTCTCTTGAAGGCTCAAATGACCATTTCTGTCCTGCAGGTAGAGTTGGACAAACTTAAAAATGCATACGTTGATGAGAAGCTTCAGCATGAAAGTGAAAGTAATGAACTGAAAAAGATGGTGATCCAGTACCAGTCTTACACCGAACATTTTGAAATGCTCCAGGAAATGAATAAGAAGTTGTATGACAGCAATGATGATTTACAGTCTGCTCTTGCTAAAGACACTGTTTGTTCCAAAAGGCAGCTTTCCTCAAAAAACAAAAGGCCACCCAGAAAACTGAAGCCACTACGACAGAGTACAATAAATCAGAGCAGCTTTGCTAATGAGGAGGACAGCATGATTGTAGTTCCTTCCAAAGAGAAATTCTCACTTGTGGAGCATTGGGCAGATAAGTATCTAGACAGCGGCGTTTCcttacagacagacacagacaggcTGCTAGGCTCCAATTATGATAGTGATGAGAGCCACGATTCTGAAGAGACTACACACCACAGCTGTTCATATGTTCCGTCTGAAATGGAGATGTCAGATTTGAAATCTGAGATGAATTTGTCAGTGAATCCAAGCAGAGTCGGCTTGTTAACCTCATCTCTGAGACGTCGGCTGTCAGCTTTTCCTGCAAAGCAAGCTGAAGTTGAAGTGATTGATTCTGATGGTTCTGTTCCAATGTACCGCTTGGTGCTGGCAGGGGACGCAGGGTCTGGAAAATCCAGCTTTTTACTGCGTCTCAGTCTAAATGAGTTCAGAGGAGAGATGCAGACCACACTGGGAGTCGATTTTCAAATGAAGAAGATGCTTGTGGATGGAGAAAAGACAAACCTTCAGATATGGGACACTGCTGGGCAGGAAAGGTTCCGCAGTATTGCCAGATCGTACTTCCGCAAAGCACATGGTGTGCTGCTTCTCTATGACGTTACTTCAGAGAACAGTTTCTTGAATGTTCGAGAGTGGATTGAGCAGATTCAGGAATCCACAGATGGCAGCGTCCCCTTGTGTTTAATTGGGAATAAAGTGGACCTGAGAGTGGTGAGGGGAGTGGAGAGCTGTGTGAGTCCTGCCCATGGCGAGAAGCTTGCTAGGACTTACAATGCCTTGTTCTGTGAGACGAGTGCCAAAGAGGGTACCAATGTAGTGGAGGCAGTTCTGCATTTAGCAAGagagataaagaaacaTACCAAACTGAGAAAGCAGACAGAGTCCCAAGTTAAGTTGACTCTAAACAGTGGAAAAAAGGCACTGAGTAACTGCTGTGGAGTTTAACTGTGACTGCTCATCACACAGCAAAAACACATGAAGGACAGAGCTTAATATGCACGTAATTCACACATTATTGTCAGATCCACTGTCTCACAATGTTCATGTCTTGGAGAAAATATCAGAAGTGACATTTAAGTGTTTtgagttttttatatatatatatatatataacacacacactcacccgtccactttaataggaacgcCTATACACCTGC
>XM_034305494.1
GGAAGTATGAATCTGGCCTCGTTGGACCACAGTGGAGAGAGGCGGGCGAGTGCTTGGGATGAGTTTGAAAATACTTTGGACGGAGATGTGGCCTACTATTTGGGCAGGGAAGTTCCTCTCAATGGAAAAAAGCAGTGGATCAGAGAGCCTGACTTCCCATCTGTTTCAGAGCTTATGGGATCCCTTGAGTGAGTTGTACCAGCAGATTCATGCCACTTGTGACAAGCTTCTGCTGCAGCAGTATGAAGATCTGATCAAAGCTGTAGTGGTGGAGAGCAAAGAACATCAGTTGGAGACTGACCAATTAGAGTCCAGTCTGAGATGGGCAGAGGAGATGATGAGCACTCAATTGTCAGAGATGGAAGAGGATTTACAGCAGCAGCTAAGTTACAAAGAGTTGACGGTCCAAGAGGAGGAGCAAAAGAAAATGGAAGGGGCCATTGAGTTGCTCCAGCTAAAGCATGAGAATGAATTGCTGGACCTACAATCAGCAGTAGAGAAGCTTACACAGTATCAAGAAGAGACAGAGTTGACCAGCCCCAGAGAAGATGTCATCAAATTAAGAAGGAAAATCCAAGAGGTTACTCAGGAGAATGAGGAGTTCAGGAAATCTCTCTTGAAGGCTCAAATGACCATTTCTGTCCTGCAGGTAGAGTTGGACAAACTTAAAAATGCATACGTTGATGAGAAGCTTCAGCATGAAAGTGAAAGTAATGAACTGAAAAAGATGGTGATCCAGTACCAGTCTTACACCGAACATTTTGAAATGCTCCAGGAAATGAATAAGAAGTTGTATGACAGCAATGATGATTTACAGTCTGCTCTTGCTAAAGACACTGTTTGTTCCAAAAGGCAGCTTTCCTCAAAAAACAAAAGGCCACCCAGAAAACTGAAGCCACTACGACAGAGTACAATAAATCAGAGCAGCTTTGCTAATGAGGAGGACAGCATGATTGTAGTTCCTTCCAAAGAGAAATTCTCACTTGTGGAGCATTGGGCAGATAAGTATCTAGACAGCGGCGTTTCcttacagacagacacagacaggcTGCTAGGCTCCAATTATGATAGTGATGAGAGCCACGATTCTGAAGAGACTACACACCACAGCTGTTCATATGTTCCGTCTGAAATGGAGATGTCAGATTTGAAATCTGAGATGAATTTGTCAGTGAATCCAAGCAGAGTCGGCTTGTTAACCTCATCTCTGAGACGTCGGCTGTCAGCTTTTCCTGCAAAGCAAGCTGAAGTTGAAGTGATTGATTCTGATGGTTCTGTTCCAATGTACCGCTTGGTGCTGGCAGGGGACGCAGGGTCTGGAAAATCCAGCTTTTTACTGCGTCTCAGTCTAAATGAGTTCAGAGGAGAGATGCAGACCACACTGGGAGTCGATTTTCAAATGAAGAAGATGCTTGTGGATGGAGAAAAGACAAACCTTCAGATATGGGACACTGCTGGGCAGGAAAGGTTCCGCAGTATTGCCAGATCGTACTTCCGCAAAGCACATGGTGTGCTGCTTCTCTATGACGTTACTTCAGAGAACAGTTTCTTGAATGTTCGAGAGTGGATTGAGCAGATTCAGGAATCCACAGATGGCAGCGTCCCCTTGTGTTTAATTGGGAATAAAGTGGACCTGAGAGTGGTGAGGGGAGTGGAGAGCTGTGTGAGTCCTGCCCATGGCGAGAAGCTTGCTAGGACTTACAATGCCTTGTTCTGTGAGACGAGTGCCAAAGAGGGTACCAATGTAGTGGAGGCAGTTCTGCATTTAGCAAGagagataaagaaacaTACCAAACTGAGAAAGCAGACAGAGTCCCAAGTTAAGTTGACTCTAAACAGTGGAAAAAAGGCACTGAGTAACTGCTGTGGAGTTTAACTGTGACTGCTCATCACACAGCAAAAACACATGAAGGACAGAGCTTAATATGCACGTAATTCACACATTATTGTCAGATCCACTGTCTCACAATGTTCATGTCTTGGAGAAAATATCAGAAGTGACATTTAAGTGTTTtgagttttttatatatatatatatatataacacacacactcacccgtccactttaataggaacgcCTATACACCTGC

Function

NR:

description
ras and EF-hand domain-containing protein-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914191.2 True 2451 mRNA 0.44 17 19159997 19239977
XM_026914192.2 False 2309 mRNA 0.44 16 19159986 19239977
XM_034305494.1 False 2091 mRNA 0.44 18 19160421 19239977

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 427172 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 918377 18224061 ~ 18241609 (+)
reln reln coding upstream 971502 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1557812 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1618333 17530434 ~ 17541653 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 39173 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 55515 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 114149 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 278626 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 318043 19558020 ~ 19572869 (+)
G101603 NA non-coding upstream 34757 19124024 ~ 19125229 (+)
G101593 NA non-coding upstream 254659 18905045 ~ 18905327 (+)
G101586 NA non-coding upstream 287528 18872242 ~ 18872458 (+)
G101583 NA non-coding upstream 290609 18869100 ~ 18869377 (+)
LOC113538061 NA non-coding upstream 343024 18802636 ~ 18816962 (+)
G101803 NA non-coding downstream 139 19240116 ~ 19240762 (+)
G101808 NA non-coding downstream 12835 19252812 ~ 19253426 (+)
G101812 NA non-coding downstream 27342 19267319 ~ 19267545 (+)
G101813 NA non-coding downstream 31876 19271853 ~ 19272115 (+)
G101824 NA non-coding downstream 61277 19301254 ~ 19301961 (+)
G101602 NA other upstream 36109 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 37489 18957428 ~ 19122497 (+)
G101466 NA other upstream 365713 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 419988 18738343 ~ 18739998 (+)
G101419 NA other upstream 560611 18598714 ~ 18599375 (+)
cdon cdon other downstream 680072 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 764379 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 836988 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1398783 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1604697 20844674 ~ 20849338 (+)

Expression


Co-expression Network