LOC113526844 (tubb3,tbb3,LOC108431516,LOC107552791)


Basic Information

Item Value
gene id LOC113526844
gene name tubb3,tbb3,LOC108431516,LOC107552791
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28133842 ~ 28141732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914241.2
GCCGGTCCGCGCTGTCCGAGTTTTCCGCCGGCAACTTGCAGGAGACagagaacagcacacacacatttgcacacacacatacccacacacacacacaccctgaggaTGAGAGAGATTGTCCACATTCAAGCCGGTCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTTATCAGTGATGAACATGGCATCGACCCCACTGGAAACTACGTGGGTGACTCAGACCTCCAGCTGGAGAGGATCAGCGTTTACTACAATGAAGCTTCCTCCTCCAAATATGTTCCCAGAGCCATcctggtggatctggagccaggCACCATGGACAGTGTACGATCTGGAGCCTTTGGCCATCTCTTCAGACCTGATAACTTCATTTTTgGTCAGAGCGGAGCAGGGAACAACTGGGCTAAAGGCCACTACACAGAAGGAGCAGAGCTAGTGGACTCTGTCCTGGACGTGGTACGGAAGGAATGCGAGAACTGCGACTGCCTCCAGGGTTTCCAGCTCACCCACTCACTCGGAGGAGGCACAGGCTCTGGCATGGGCACACTGCTGATCAGCAAAGTGAGAGAAGAATATCCCGACCGCATCATGAACACCTTCAGTGTGGTCCCTTCCCCCAAAGTGTCCGACACAGTGGTGGAGCCCTACAACGCCACGCTGTCCATCCACCAGCTGGTTGAGAACACAGATGAGACATACTGCATTGATAACGAAGCCCTATACGACATCTGCTTCCGCACACTCAAGCTGGCCACACCCACTTACGGTGACCTCAACCACCTGGTCTCGGCTACCATGAGCGGAGTCACGACCTCTCTGCGCTTTCCAGGCCAGCTGAACGCTGACCTGCGCAAGCTGGCTGTCAACATGGTACTTCCCCGCCTGCACTTCTTCATGCCTGGATTCGCTCCTTTGACAGCACGTGGCAGCCAACAGTACCGTGCTCTTACTGTCCCTGAGCTCACACAGCAGATGTTTGACGCCAAAAACATGATGGCCGCTTGCGATCCACGTCACGGCCGCTACCTCACTGTGGCCACCGTCTTCCGAGGCCGCATGTCCATGAAGGAAGTGGATGAGCAGATGCTGGCCATCCAGAGCAAGAACAGCAGCTATTTTGTCGAATGGATCCCCAACAATGTGAAGGTTGCTGTGTGCGACATTCCACCCAGGGGGCTCAAGATGTCCTCCACCTTCATTGGCAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCAGGCGTAAGGCTTTCTTGCACTGGTACACTGGTGAAGGCATGGATGAGATGGAGTTCACAGAGGCTGAAAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGATGCCACGGCTGAGGAAGAAGGAGAGATgtatgaggatgatgaggaggagtcAGAGGCCCAGGTTCAAAAGTAAACACTCACGAAGTAGCCATTATAGTATACAACAACCCTTCTCTAAAACCGACCTCTTATCACGCAGCCGGCAAAAATATCTTAATCTTTCACTTCTCTTACAGGTAGATTAAACTTCATGTTAACCATTTGTGCCAGTTACAGCTGACATTCTGTACTTTACTGTGCCATAACAGCTTCTTGATGGTACTGTATTTGTTGTATAGTGTTGTTCACTGACCAATCCTAAATAAACCAGTGTTCCAAATGGACCTCA

Function

symbol description
tubb3 Enables netrin receptor binding activity. Involved in axon guidance and dorsal root ganglion development. Located in microtubule. Implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles.

NR:

description
PREDICTED: tubulin beta-3 chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914241.2 True 1710 mRNA 0.52 5 28133842 28141732

Neighbor

gene id symbol gene type direction distance location
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding upstream 9922 28119024 ~ 28123920 (+)
tcf25 tcf25,LOC106562269 coding upstream 18881 28098396 ~ 28114961 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding upstream 38016 28089378 ~ 28095826 (+)
mvda mvd,LOC106562275 coding upstream 45417 28080997 ~ 28088425 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding upstream 54955 28071684 ~ 28078887 (+)
LOC113526563 LOC108264624 coding downstream 21953 28163685 ~ 28181203 (+)
gas8 gas8,LOC108276428 coding downstream 65021 28206753 ~ 28215082 (+)
mthfsd mthfsd coding downstream 74055 28215787 ~ 28223504 (+)
emc8 emc8,LOC106587369 coding downstream 311328 28453060 ~ 28460177 (+)
gins2 gins2,psf2 coding downstream 320097 28461829 ~ 28467750 (+)
G106343 NA non-coding upstream 35841 28097729 ~ 28098001 (+)
G106118 NA non-coding upstream 404681 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 531108 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 635212 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 899618 27229784 ~ 27234224 (+)
LOC117597547 NA non-coding downstream 92075 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 248466 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 288271 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 427738 28569470 ~ 28571760 (+)
G106527 NA non-coding downstream 430947 28572679 ~ 28573466 (+)
uraha LOC108264586,LOC108417536 other upstream 63157 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 167534 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 588316 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 919272 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1300415 26830978 ~ 26833427 (+)
def8 def8 other downstream 4531 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 657732 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2252528 30394260 ~ 30498315 (+)

Expression


Co-expression Network